Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq99465 143 3e-29 seq85463 123 3e-23 seq31467 113 5e-20 seq71831 111 2e-19 seq102078 102 9e-17 seq109952 91.5 2e-13 seq110392 89.7 6e-13 >seq99465 Length=4513 Score = 143 bits (158), Expect = 3e-29 Identities = 219/311 (70%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 169821 TGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 169880 ||| ||||| | |||| | ||||||| || || |||||||||||||| | ||| || Sbjct 2945 TGTTTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAAT 3004 Query 169881 CTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCC 169940 || ||||||||||||| ||| | || ||| | || |||||||| ||||| ||||| Sbjct 3005 TTCTTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA--- 3061 Query 169941 TTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGG 170000 | || ||| ||| ||||| || | |||| || || ||||| || |||||||| Sbjct 3062 --TTCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGG 3119 Query 170001 TTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGG 170060 ||| | || ||||| | | ||||| |||| ||||| | || | || | || Sbjct 3120 TTCCTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGG 3179 Query 170061 TTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 170120 ||| || ||||| || | | ||||| | || || || ||||| ||| | ||||||||||| Sbjct 3180 TTACAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGG 3238 Query 170121 TCGTCTTATCT 170131 || | |||| Sbjct 3239 CCGATTGATCT 3249 >seq85463 Length=6098 Score = 123 bits (136), Expect = 3e-23 Identities = 200/288 (69%), Gaps = 20/288 (7%) Strand=Plus/Plus Query 170107 CACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTA 170166 || ||||||||||| || | |||||||| |||||| ||| ||||||| | || Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 170167 CACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGC 170226 |||||| ||||||| | || ||||| || || | ||||| || ||| |||||| || Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGCTA--GGTATCAGC 4137 Query 170227 ACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT-AACGG 170285 ||||| ||||| | ||||||||||| |||||| |||| || |||||| | || | Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 170286 AAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTAT 170345 ||| |||| ||| |||| | | ||| | || ||| | ||||| |||||||| Sbjct 4198 CAAAGTCGT--------GGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 170346 GCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 ||||| | || || | | | ||||||||||| ||| ||| Sbjct 4250 GCATG---------CTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq31467 Length=18065 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 169954 GGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACT 170013 || ||||| || | ||||| || || ||||| || ||||||||||| | || ||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 170014 TCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGA 170073 || | | ||| | ||||| ||||| | || || || | ||||| | | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 170074 CAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTC 170133 ||||| |||||||| || || || ||||| || || ||||||||| | || | |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 170134 CAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGC 170180 || |||||| ||||||||||| | |||||||||| ||||| Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGC 5252 >seq71831 Length=3823 Score = 111 bits (122), Expect = 2e-19 Identities = 207/303 (68%), Gaps = 1/303 (0%) Strand=Plus/Minus Query 169821 TGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 169880 ||| ||||| | |||||| ||||||| || || | |||||||||||| ||||| || Sbjct 978 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAAT 919 Query 169881 CTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCC 169940 || ||||||||||||| ||| | || || | || ||||| ||||||| ||| | || Sbjct 918 TTCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCA-CACATTCTTATGTACCC 860 Query 169941 TTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGG 170000 || || ||| | | ||||| | | | || || || ||||| | |||||||| Sbjct 859 ATTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGG 800 Query 170001 TTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGG 170060 ||| | | ||||| | | ||||| |||| ||||| | || || || | || Sbjct 799 TTCCTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGG 740 Query 170061 TTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 170120 || | || | ||||| ||||||| || || || | | | || || ||||||||||| Sbjct 739 ATACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGG 680 Query 170121 TCG 170123 || Sbjct 679 CCG 677 >seq102078 Length=5739 Score = 102 bits (112), Expect = 9e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 153767 GCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAAC 153826 ||| ||||||||| | || |||||||||||||| |||||||| || ||||| ||||| | Sbjct 5733 GCAGAGGTTTGGTGTGCCGATGGGATATGGAGGGCCTCATGCGGCGTTCTTGGCAACTTC 5674 Query 153827 AGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGG 153886 | |||||||||| | ||| || || || ||| | ||| | || ||| | || Sbjct 5673 GCAGGAGTATAAGAGGATGATGCCGGGGAGGATTATTGGTGTGAGTGTTGATTCGTATGG 5614 Query 153887 TAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGC 153946 || || | | ||| | ||||| || ||||||||||| | || || || || Sbjct 5613 GAAGCCTGCTCTGCGTATGGCAATGCAGACAAGGGAGCAGCATATTCGTAGGGATAAGGC 5554 Query 153947 AACCAGTAACATCTGCACAGCTCAGG 153972 ||| || ||||| ||||| ||||||| Sbjct 5553 AACGAGCAACATTTGCACGGCTCAGG 5528 >seq109952 Length=4426 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| ||||||||||| ||||| || || ||||| ||||| || ||||| || Sbjct 324 GAGAATCCTGGTTGGTACACACAGTACACACCTTACCAAGCAGAGATCTCACAGGGCAGG 265 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTA-CAGGATTACCAATAGC 153382 | ||| |||| | ||||||||||| | |||||||| || | |||| || || || | Sbjct 264 CTTGAATCTTTGCTGAATTACCAAACCATGATCACAGATCTAACCAGGCTT-CCCATGTC 206 Query 153383 AAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTAT 153432 ||||| || | | || || | ||| || || || || || || ||||| Sbjct 205 GAACGCTTCGTTGCTCGACGAGGGAACAGCTGCGGCCGAGGCCATGGCTAT 155 >seq110392 Length=2942 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| || | | ||| || || ||| ||| |||| Sbjct 548 TTTGATATTATGGATGACTGGTTACGAAGGGGCCATTTCGTTTTTGTAGCCTGGCCTGGC 489 Query 170589 CTTTTACT-TCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTT 170647 || || || ||| |||||||| || | | | || ||||||||| | | || ||||| Sbjct 488 CTATTGCTCTCT-CCTTGTGCCTATTT-TGTGTAGGGGGTTGGTTCACAAGTACAACCTT 431 Query 170648 CGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCT 170707 || || ||||||||||| ||||| | || || ||| | || || ||||| ||| | Sbjct 430 TGTAACTTCATGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGCTGTAATTTCTT 371 Query 170708 AACAGCAGCAGTTTCCACACCTG 170730 |||| | |||||||| || |||| Sbjct 370 AACAACCGCAGTTTCTACTCCTG 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578329551161120