Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq31467 156 5e-33 seq99465 143 3e-29 seq115592 141 1e-28 seq85463 140 4e-28 seq71831 129 7e-25 seq96029 107 2e-18 seq110764 104 3e-17 seq71912 91.5 2e-13 >seq31467 Length=18065 Score = 156 bits (172), Expect = 5e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 168414 CGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTAC 168473 |||||| ||||| ||||| || ||| | || ||||||||||| || ||||| || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 168474 TTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGG 168533 |||| | | | | || || || |||| ||||| || | ||||||| | ||| Sbjct 5419 TTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 168534 ACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTT 168593 ||||| |||||||| || || ||||||||||||||||||||||| | || |||||||| Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 168594 CCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATG 168647 |||||| ||| ||||||||||| || || || |||||||| || ||||| || Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq99465 Length=4513 Score = 143 bits (158), Expect = 3e-29 Identities = 206/289 (71%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 168304 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 168363 |||||||| ||||| ||||||| ||||| | ||||| || | || ||||||| |||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 168364 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 168423 | || ||| | |||||||| |||||||| |||||| | ||||| ||||| || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCATTC-----ATATGTGAGGCGTAGCG 3081 Query 168424 GGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTC 168483 || ||||| | ||| | || ||||||||||| || ||||| |||||| | | Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 3141 Query 168484 GTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAA 168543 | || | || || |||| ||| | || | |||||||| ||||| || | | || Sbjct 3142 ATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-AA 3200 Query 168544 GAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCT 168592 ||| | || || |||||||| || |||||||||| || || ||||||| Sbjct 3201 GAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq115592 Length=218 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 169877 TTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAA 169936 ||||| | || ||||| | ||||| ||||||| ||| ||||| || || || | |||| Sbjct 204 TTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAA 145 Query 169937 GACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTAT 169996 || ||||| |||||||| ||| || ||| | | || || | ||||| |||||| Sbjct 144 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTAT 85 Query 169997 TCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAG 170056 || ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 84 TCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAA 25 Query 170057 CGTTGGCTTCATTTTTTCATGTT 170079 |||||| | ||||| || ||||| Sbjct 24 CGTTGGTTACATTTCTTTATGTT 2 >seq85463 Length=6098 Score = 140 bits (154), Expect = 4e-28 Identities = 178/245 (73%), Gaps = 9/245 (4%) Strand=Plus/Plus Query 168567 TCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTT 168626 |||||||||||| || || |||||||||||||| ||| ||| ||||||| || || || Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 168627 GCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTC 168686 |||||| |||| ||||| |||||||| || || || |||||||| | || || || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 168687 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 168746 | ||||| ||||| || || |||||||| || ||| | ||| | ||||| |||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 168747 TCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTAT 168806 || || | |||| ||| | | ||||| ||| || ||||| |||||||| Sbjct 4197 TC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 168807 GCATG 168811 ||||| Sbjct 4250 GCATG 4254 >seq71831 Length=3823 Score = 129 bits (142), Expect = 7e-25 Identities = 202/288 (70%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 168304 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 168363 |||||||| ||||| | ||||| ||||| || ||||| || | || ||||||| |||| Sbjct 956 GGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTCTTGTACTTTCAACTTCATG 897 Query 168364 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 168423 | || || | |||||||||| ||||| ||| | || || |||||| | |||| ||| Sbjct 896 ATTGTATTTTAGGCTGAGCACAC-ATTCTTATGTACCCATTTCATATGTTAAGCGTAGCT 838 Query 168424 GGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTC 168483 | |||| | ||| | || |||| |||||| || |||| |||||| | | Sbjct 837 AGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGCAACTTCTAGTTTG 778 Query 168484 GTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAA 168543 | || | || || |||| ||||| || | || |||| || | ||||| || Sbjct 777 ATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATACAGATTTAGTCAAGAGAAA 718 Query 168544 GAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATC 168591 ||||| || || |||| | |||||||||||||||| || || |||||| Sbjct 717 GAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCGATTGATC 670 >seq96029 Length=8464 Score = 107 bits (118), Expect = 2e-18 Identities = 200/291 (69%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 169355 GGTTGGTCTGGTCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACT 169414 || ||| |||| ||| | || || | ||||||| ||||||| || || ||| || | Sbjct 1621 GGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGGTTCGCA 1679 Query 169415 GGTACAGCGTTTGTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAA 169471 |||||| | ||||| ||||| ||||| ||||| | | || |||| || || ||| Sbjct 1680 GGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCC---TATTTGGAA 1736 Query 169472 GGCGCTAACTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTG 169531 ||| ||| ||| | || |||| || || | |||| | | | | || || | Sbjct 1737 GGCTGTAATTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATTCTTTA 1796 Query 169532 CTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGT 169591 | || || ||| |||| |||| |||||| ||||| | | |||||||||||||| ||| Sbjct 1797 TTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGGGGGGT 1856 Query 169592 CTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATG 169642 || |||| || || || || ||||| | || | | | || ||||||||| Sbjct 1857 CTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATG 1907 >seq110764 Length=2751 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 168619 CGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTT 168678 || || || ||||||||||| ||||| |||||||| || || ||||||||||| || | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 168679 GGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 168725 || || ||| ||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq71912 Length=2485 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 170144 CGTGCTTACGATTTC-GTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 170202 |||||||| |||||| || |||||| || | || || |||||| || |||||||||| Sbjct 1571 CGTGCTTATGATTTCCGTTTCTCAGGAAATTCGTGCCGCGGAAGATTCAAAATTTGAGAC 1512 Query 170203 CTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGA 170262 || ||||||||||| || ||||| || ||||| ||| || ||| || || || Sbjct 1511 TTTTTACACCAAAAATATTCTATTAAACGAAGGTATTCATGTTTGGACAGCGACTCAAGA 1452 Query 170263 TCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCC 170304 ||| | ||||||| | || ||| | ||||| ||||| || Sbjct 1451 TCAGCATAATGAAAATCTTATATTCTCTGAAGAGGTTCTACC 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573597578026440