Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq31467 179 4e-40 seq115592 154 2e-32 seq85463 134 2e-26 seq71831 134 2e-26 seq99465 127 2e-24 seq110764 107 2e-18 seq96029 104 3e-17 seq46960 93.3 5e-14 seq42107 84.2 2e-11 seq110392 82.4 8e-11 seq100051 82.4 8e-11 >seq31467 Length=18065 Score = 179 bits (198), Expect = 4e-40 Identities = 180/234 (77%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 164336 CGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTAC 164395 |||||| ||||| ||||| ||||| || || |||||||| ||||| ||||| |||| || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 164396 TTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGG 164455 |||| || | | |||||||| |||| ||| || || | ||||||| | || Sbjct 5419 TTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 164456 TCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTT 164515 |||||| |||||||| || || || || |||||||| ||||||||| | || ||||||| Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 164516 CCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATG 164569 |||||| ||| ||||||||||| ||||| || |||||||| || ||||| || Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq115592 Length=218 Score = 154 bits (170), Expect = 2e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 165752 GTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAAT 165811 ||||| ||| | |||| | ||| ||||| | || || ||||||| ||| ||||| ||| Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 165812 ACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAG 165871 ||| | | | |||||||||| | ||||||||| ||| || ||| || | ||||||| Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 165872 GAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCG 165931 |||||||| || || ||||| ||||| ||||| || ||||| || ||||| || |||| Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 165932 TTTAGTAATAAGAGGTGGTTGCATTTCTTTATG 165964 ||| ||||| | ||||| |||||||||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATG 4 >seq85463 Length=6098 Score = 134 bits (148), Expect = 2e-26 Identities = 202/288 (70%), Gaps = 18/288 (6%) Strand=Plus/Plus Query 164489 TCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTT 164548 ||| ||||||||||| || ||||||||||||| ||| ||| ||||||| ||||| || Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 164549 GCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTC 164608 |||||| |||| ||||| |||||||| || || || |||||||| | || ||| | Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 164609 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGG 164668 | ||||| ||||| || || |||||||| || ||| | ||| | | ||| |||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 164669 TCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTAT 164728 || || | |||| || | ||||||| ||| || ||||| |||||||| Sbjct 4197 TC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 164729 GCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 164776 || | ||||| || | | |||| || || ||||||| ||| Sbjct 4250 GC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq71831 Length=3823 Score = 134 bits (148), Expect = 2e-26 Identities = 216/309 (70%), Gaps = 1/309 (0%) Strand=Plus/Minus Query 164205 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATC 164264 || ||| || | || || | |||||||| || | ||| | ||||| || || || Sbjct 977 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATT 918 Query 164265 TCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCCC 164324 ||| | || ||||||| |||| | || || | || ||||||| ||| || ||| |||| Sbjct 917 TCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCA 859 Query 164325 TTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGT 164384 || |||||| | |||| ||| | |||| | ||| || || ||||||| ||||| ||| Sbjct 858 TTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGT 799 Query 164385 TCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGT 164444 || ||| |||||| || | | ||||||| |||| ||| || || | || Sbjct 798 TCCTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGA 739 Query 164445 TACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGT 164504 |||| ||| ||||||| ||||||| || || || | ||||||| ||||||||||| Sbjct 738 TACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGC 679 Query 164505 CGTCTGATC 164513 || ||||| Sbjct 678 CGATTGATC 670 >seq99465 Length=4513 Score = 127 bits (140), Expect = 2e-24 Identities = 215/310 (69%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 164205 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATC 164264 || ||| || |||| | | |||||||| || ||||| | ||||| | || || Sbjct 2946 GTTTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATT 3005 Query 164265 TCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCCC 164324 ||| | || ||||||| |||| | || ||| | || ||||| || || || ||||| Sbjct 3006 TCTTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA---- 3061 Query 164325 TTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGT 164384 | |||||| ||||| || || ||||| | ||| || || |||||||| ||||| ||| Sbjct 3062 -TTCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGT 3120 Query 164385 TCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGT 164444 || |||| |||||| || | | ||||||| |||| ||| | || | ||| Sbjct 3121 TCCTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGT 3180 Query 164445 TACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGT 164504 ||||| || ||||| | | ||||| | || || || || || || | ||||||||||| Sbjct 3181 TACAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGC 3239 Query 164505 CGTCTGATCT 164514 || |||||| Sbjct 3240 CGATTGATCT 3249 >seq110764 Length=2751 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 164541 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTT 164600 ||||| || ||||||||||| ||||| |||||||| || || ||||||||||| || | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 164601 GGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 164647 ||| | ||| ||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq96029 Length=8464 Score = 104 bits (114), Expect = 3e-17 Identities = 210/307 (68%), Gaps = 5/307 (2%) Strand=Plus/Plus Query 165236 TTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGG 165295 |||| || ||| |||| || | || ||| | ||| ||| ||||||| || |||||| Sbjct 1615 TTTGGAGGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGG 1673 Query 165296 CTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTG 165355 | | || || ||||| | || |||||||| || || |||||||||||| || Sbjct 1674 TTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTG 1733 Query 165356 G-AGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATT 165413 | ||| || || |||||| || | |||||||||| || || | | | | |||| Sbjct 1734 GAAGGCTGTAA--TTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATT 1791 Query 165414 CTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTG 165473 || | || | || ||| ||||||| | ||||| ||||| | ||| ||| | | Sbjct 1792 CTTTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGG 1851 Query 165474 GGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTC 165533 |||| || ||| |||| || || || || || |||||| ||||| ||||||||| | | Sbjct 1852 GGGGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATGTTAC 1911 Query 165534 GTCAGTT 165540 ||| || Sbjct 1912 ATCAATT 1918 >seq46960 Length=374 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 163830 TGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCG 163887 |||||||| ||| ||||||||||||| || ||| | ||||| ||||| || || | Sbjct 22 TGGTTCGGTGTTTTGATGATCCCTAC-CTCATTGACCGCAACT-TCTGTATTTATTATTA 79 Query 163888 CCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGC 163947 ||||| | |||||||| || || || || |||||||||||||||| |||| | || | | Sbjct 80 CCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACTTGTTTCTGGATATC 139 Query 163948 TCATGTATGGTAACAACAT 163966 | | ||||| |||||||| Sbjct 140 TACTTTATGGGAACAACAT 158 >seq42107 Length=2384 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 164116 TGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTT 164175 |||||||||||||||| || || |||| | |||||||| ||||||||| |||||| | Sbjct 1375 TGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCAT 1434 Query 164176 ACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCC 164221 | || || || |||||||| | |||| || ||| || |||| || Sbjct 1435 ATTCAGCTCCTGTTGCAGCTGTTACCGCTGTTTTCTTGATCTACCC 1480 >seq110392 Length=2942 Score = 82.4 bits (90), Expect = 8e-11 Identities = 162/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | | | | |||||||||||| | ||| |||| || | || | | Sbjct 536 GATGACTGGTTACGAAGGGGCCATTTCGTTTTTGTAGCCTGGCCTGGCCTATTGCTCTCT 477 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| ||| | | || |||||| | || | || || || | || ||| Sbjct 476 CCTTGTGCCTATTTTG-TGTAGGGGGTTGGTTCACAAGTACAACCTTTGTAACTTCATGG 418 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAG 165383 ||||| || || ||||| ||||||||| |||| || || || ||||||| | | |||| Sbjct 417 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAACCGCAG 360 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGA 165438 |||||||||| || | | | | |||||| | || | || ||| ||||||| Sbjct 359 TTTCTACTCCTGCTAATAGTTTAGTGCATTCTTTATTGTTACTGTGGAGTCCTGA 305 >seq100051 Length=9184 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 164509 TGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCAT 164568 |||||||| |||| ||| |||||||| || ||||| || ||||||||||| |||| | Sbjct 2492 TGATCTTCTAATATGCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAACTGCTT 2433 Query 164569 GGCCTGTTGTTGGCATCTGGTTCAC 164593 ||||||| | || ||||||||||| Sbjct 2432 GGCCTGTAATGGGTATCTGGTTCAC 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556075538410920