Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq99465 192 7e-44 seq71831 168 8e-37 seq31467 143 3e-29 seq103399 91.5 2e-13 seq85463 91.5 2e-13 >seq99465 Length=4513 Score = 192 bits (212), Expect = 7e-44 Identities = 229/308 (74%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 168914 TTCCTTG-TATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTC 168972 || |||| | |||| | ||||||| || ||| |||||||||||||||| ||||||||| Sbjct 2948 TTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTC 3007 Query 168973 TGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTT 169032 | | || |||||||||||| | |||||| | || ||||| || ||||||||||| | Sbjct 3008 TTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----T 3062 Query 169033 CCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTC 169092 |||||| ||| ||||| ||| | |||| || || |||||| || ||||||||||| Sbjct 3063 TCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTC 3122 Query 169093 ACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTA 169152 | ||||| ||| | | ||||| | || || || | ||| || || | ||||| Sbjct 3123 CTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTA 3182 Query 169153 CAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAG 169212 ||| |||||||| | | ||||| | |||||||| || || ||| |||| ||||| || | Sbjct 3183 CAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCG 3241 Query 169213 ATTAATCT 169220 ||| |||| Sbjct 3242 ATTGATCT 3249 >seq71831 Length=3823 Score = 168 bits (186), Expect = 8e-37 Identities = 223/307 (73%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 168914 TTCCTTG-TATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTC 168972 || |||| | |||||| ||||||| || ||| | |||||||||||||||||||||||| Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 168973 TGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTT 169032 | | || |||||||||||| | ||||| | || |||||| ||||||||||| | || || Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCAC-ACATTCTTATGTACCCATT 857 Query 169033 CCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTC 169092 |||||| | | ||||| || | | || || || |||||| | ||||||||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 169093 ACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTA 169152 | | ||| ||| | | ||||| | || || || | |||||| || | || || Sbjct 796 CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATA 737 Query 169153 CAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAG 169212 || || ||||||| ||||||| |||||||| | | || ||||| ||||| || | Sbjct 736 CAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCG 677 Query 169213 ATTAATC 169219 ||| ||| Sbjct 676 ATTGATC 670 >seq31467 Length=18065 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 169043 GGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACA 169102 || ||||| ||| | ||||| || || |||||| || ||||||||||| | ||||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 169103 TCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGT 169162 ||| | | ||| | || || || || | |||||| || | ||||||| | |||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 169163 CAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTC 169222 ||||| |||||||| |||||||| || || || ||||| ||||| | |||| |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 169223 CAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 || ||||| |||||||||||||| | | |||||||| ||||| Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGC 5252 >seq103399 Length=14789 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 168923 TACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTC 168982 |||||| |||||||||| ||| ||||||||||||||||||||||||||||| || || Sbjct 8521 TACCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTATC 8580 Query 168983 AACTTCATGTTCGTA 168997 ||||||||| | ||| Sbjct 8581 AACTTCATGATTGTA 8595 >seq85463 Length=6098 Score = 91.5 bits (100), Expect = 2e-13 Identities = 168/245 (69%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 169196 CATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTT 169255 ||||| ||||| || |||| |||||||| ||||| |||||| ||||||| | | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 169256 CACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGT 169315 |||||| ||||||| | | || || || || | ||||| || ||| |||||| | Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGCTA--GGTATCAGC 4137 Query 169316 ACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT-GTTAACGG 169374 ||||| ||||| | || || || || |||||| |||| || || ||| || || | Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 169375 TAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAAT 169434 || || | ||| ||| | | ||| | || ||||||||||| ||||| || Sbjct 4198 CAAAGTCGT--------GGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 169435 GCATG 169439 ||||| Sbjct 4250 GCATG 4254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563580875948640