Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq99465 118 1e-21 seq85463 105 8e-18 seq31467 104 3e-17 seq71831 93.3 5e-14 seq109952 91.5 2e-13 seq110392 89.7 6e-13 seq110764 86.0 7e-12 >seq99465 Length=4513 Score = 118 bits (130), Expect = 1e-21 Identities = 193/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 || |||||||||||||| | ||| || || |||| |||||||| ||| | || ||| | Sbjct 2979 TTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATGATTGTATTCTAG 3038 Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGA 172392 || |||||||| ||||| ||||| | || ||| ||| ||||| || | || | Sbjct 3039 GCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCGGGTGTATTCGAC 3093 Query 172393 GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACA 172452 || || ||||| || ||||| ||||| || || || ||| | | ||||| | || Sbjct 3094 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGTAAACC 3153 Query 172453 ACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAAC 172512 || ||| ||| | || | || ||||| ||||| || | | ||||| | || || Sbjct 3154 ACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-AAGAAGCTTATAAT 3212 Query 172513 ATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCT 172549 || ||||| ||| | ||||||||||| || | |||| Sbjct 3213 ATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq85463 Length=6098 Score = 105 bits (116), Expect = 8e-18 Identities = 170/244 (70%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 172525 CACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTT 172584 || ||||||||||| || | |||||||| |||||| |||| ||||||| | | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 172585 CACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGT 172644 |||||| ||||||| | || ||||| || || | ||||| || ||| |||||| | Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGCTA--GGTATCAGC 4137 Query 172645 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGT 172704 ||||| ||||| || || |||||||| || ||| |||| || || ||| | | || Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 172705 AAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATG 172764 | | | | |||| ||| | | ||| | || ||||| ||||| ||||||||| Sbjct 4198 CAAAGT-------CGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTATG 4250 Query 172765 CATG 172768 |||| Sbjct 4251 CATG 4254 >seq31467 Length=18065 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 172372 GGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACA 172431 || ||||| || | || || || || ||||| || ||||| ||||| || || || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 172432 TCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGA 172491 ||| | | ||| | || || || ||| ||||| || | || |||| | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 172492 CAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTC 172551 ||||| |||||||| || || || ||||| || || ||||||||| | || | |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 172552 CAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 || |||||| |||||||||||| | | |||||||| ||||| Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGC 5252 >seq71831 Length=3823 Score = 93.3 bits (102), Expect = 5e-14 Identities = 202/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 172243 TTCCTTG-TGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 172301 || |||| | || ||| | ||||| || || | |||||||||||| ||||| || || Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 172302 AGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTT 172361 |||| |||||||| ||| | || || | || ||||| ||||||| ||| | || || Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCA-CACATTCTTATGTACCCATT 857 Query 172362 CCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTC 172421 || ||| | | ||||| | | | | || || ||||| | ||||| ||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 172422 TTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATA 172481 || | || ||| | | ||||| | || || ||| ||||| || | ||||| Sbjct 796 CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATA 737 Query 172482 CAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCG 172541 || || | ||||| ||||||| || || || | | | || || ||||||||||| || Sbjct 736 CAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCG 677 >seq109952 Length=4426 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| ||||||||||| ||||| || || ||||| ||||| || ||||| || Sbjct 324 GAGAATCCTGGTTGGTACACACAGTACACACCTTACCAAGCAGAGATCTCACAGGGCAGG 265 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| |||| | ||||||||||| | |||||||| || || | || || || | Sbjct 264 CTTGAATCTTTGCTGAATTACCAAACCATGATCACAGATCTAACCAGGCTTCCCATGTCG 205 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||||| || | | || || | ||| || || || || || ||| Sbjct 204 AACGCTTCGTTGCTCGACGAGGGAACAGCTGCGGCCGAGGCCATG 160 >seq110392 Length=2942 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| || | | |||||| || | | ||| |||| Sbjct 548 TTTGATATTATGGATGACTGGTTACGAAGGGGCCATTTCGTTTTTGTAGCCTGGCCTGGC 489 Query 173011 CTTTTACT-TCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTT 173069 || || || ||| |||||||| || ||| | | || ||||||||| | | || ||||| Sbjct 488 CTATTGCTCTCT-CCTTGTGCCTAT-TTTGTGTAGGGGGTTGGTTCACAAGTACAACCTT 431 Query 173070 CGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTT 173129 || || ||||||||||| ||||| | || ||| ||| | ||||| || || || Sbjct 430 TGTAACTTCATGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGCTGTAATTTCTT 371 Query 173130 AACAGCAGCAGTCTCCACACCTG 173152 |||| | ||||| || || |||| Sbjct 370 AACAACCGCAGTTTCTACTCCTG 348 >seq110764 Length=2751 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 172585 CACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGT 172644 |||||||||||||| | || ||||| || || | ||||| || || | |||||| Sbjct 1549 CACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAAC 1608 Query 172645 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAAT 172684 || ||||| |||||||| ||||||||||| |||||||||| Sbjct 1609 ACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAAT 1648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587154473374480