Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq31467 159 4e-34 seq115592 143 3e-29 seq85463 132 5e-26 seq71831 107 2e-18 seq110764 105 7e-18 seq100051 84.2 2e-11 seq96029 84.2 2e-11 >seq31467 Length=18065 Score = 159 bits (176), Expect = 4e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 162937 GGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACA 162996 || || || ||||| ||||| || || || |||||||| ||||| ||||| ||||| || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 162997 TCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGT 163056 ||| | || | || || || |||| ||| || || | ||||||| | |||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 163057 CAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTC 163116 ||||| ||||| || || || ||||| || || ||||||||||| | || ||||||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 163117 CAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATG 163169 |||||||| ||||||||||| ||||| || |||||||| || ||||| || Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq115592 Length=218 Score = 143 bits (158), Expect = 3e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 164177 GAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAA 164236 ||||||||||| || | || | || ||||||| |||||||| || | || || |||| Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 164237 ATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGG 164296 |||| || | ||||||||| || ||||| || || || ||| | | || || | Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 164297 AAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTG 164356 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 164357 CGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 164393 | ||||| || || || ||| | ||||| || ||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq85463 Length=6098 Score = 132 bits (146), Expect = 5e-26 Identities = 201/285 (71%), Gaps = 22/285 (8%) Strand=Plus/Plus Query 163090 CATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTG 163149 ||||||||||| || || ||||||||||||||||| ||| ||||||| ||||| || Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 163150 CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA 163209 |||||| |||| ||||| |||||||| || || || |||||||| || | | || ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGC---TAG-GTATCA 4135 Query 163210 AC--CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGG 163267 | |||||| ||||| || || |||||||| || ||| | ||| | ||||| |||| Sbjct 4136 GCGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAA 4195 Query 163268 GTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTA 163327 ||| || | |||| || | | |||||||| | ||||| ||||||| Sbjct 4196 GTCA-------AAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTA 4248 Query 163328 TGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCTG 163372 ||| ||||||| || | | | || ||||| || |||| Sbjct 4249 TGC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTG 4284 >seq71831 Length=3823 Score = 107 bits (118), Expect = 2e-18 Identities = 210/309 (68%), Gaps = 1/309 (0%) Strand=Plus/Minus Query 162805 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATC 162864 || ||| || | || || | |||||||| ||| | ||| | ||||| | || || Sbjct 977 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATT 918 Query 162865 AGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCC 162924 | |||| ||||||| |||| |||| || | || ||||||| |||||| ||| | || Sbjct 917 TCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCA 859 Query 162925 TTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGT 162984 || || ||||| | || || |||| | || || || || ||||||| ||||| ||| Sbjct 858 TTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGT 799 Query 162985 TCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGT 163044 || |||| || ||| | || | | || || |||| ||| || || | || Sbjct 798 TCCTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGA 739 Query 163045 TACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGT 163104 |||| || ||||||| |||| || || || |||| | || ||||||||||| || Sbjct 738 TACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGC 679 Query 163105 CGTTTGATC 163113 || |||||| Sbjct 678 CGATTGATC 670 >seq110764 Length=2751 Score = 105 bits (116), Expect = 7e-18 Identities = 90/109 (83%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 163141 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTT 163200 ||||| || ||||||||||| ||||| |||||||| || || ||||||||||| | ||| Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTG--CTT 1597 Query 163201 GGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 163247 || ||| |||||||| |||||||| ||||||||||| |||||||| Sbjct 1598 TAGGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq100051 Length=9184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 163108 TTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCA 163167 ||||||||| ||||||| |||||||| || ||||| || ||||||||||| |||| Sbjct 2493 TTGATCTTCTAATATGCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAACTGCT 2434 Query 163168 TGGCCTGTTGTCGGCATCTGGTTCAC 163193 |||||||| | || ||||||||||| Sbjct 2433 TGGCCTGTAATGGGTATCTGGTTCAC 2408 >seq96029 Length=8464 Score = 84.2 bits (92), Expect = 2e-11 Identities = 201/300 (67%), Gaps = 3/300 (1%) Strand=Plus/Plus Query 163669 GGTTGGTCTGGATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACT 163728 || ||| |||| || |||| || | ||| ||| | || || || || ||| | | Sbjct 1621 GGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGGTTCGCA 1679 Query 163729 GGTACAACTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGT 163788 ||||||||||| || || || ||||| |||||| | | |||| ||||||| | || || Sbjct 1680 GGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTGGAAGGC 1739 Query 163789 GCTAATTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTT 163848 |||||| | ||| | || || || | | |||| | | | | |||||| || || Sbjct 1740 TGTAATTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATTCT-TTATT 1798 Query 163849 CTT-CTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACT 163907 || || ||| ||||||| | || || ||||| | ||| ||| | ||||| || Sbjct 1799 GTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGGGGGGTCT 1858 Query 163908 CTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATT 163967 |||| ||| || || || || || | || | || || ||||||||| | | ||||| Sbjct 1859 GTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATGTTACATCAATT 1918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556733733188600