Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq31467 161 1e-34 seq71831 141 1e-28 seq115592 132 5e-26 seq96029 113 5e-20 seq85463 84.2 2e-11 seq46960 84.2 2e-11 seq110392 82.4 9e-11 >seq31467 Length=18065 Score = 161 bits (178), Expect = 1e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 167639 CGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTAC 167698 |||||| ||||| ||||||||||| || || |||||||| ||||| ||||| |||| || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 167699 CTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGG 167758 ||| || | | |||||||| |||| ||| || || | ||||||| | ||| Sbjct 5419 TTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 167759 TCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTT 167818 ||| || ||||| || ||||| ||||| || |||||||||||||| | || ||||||| Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 167819 CCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTT 167860 |||||| || ||||||||||| || ||| | |||||||| Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTT 5258 >seq71831 Length=3823 Score = 141 bits (156), Expect = 1e-28 Identities = 205/288 (71%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 167529 GGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATG 167588 |||||||| ||| | ||| | |||||||| || || ||| |||| ||||||| |||| Sbjct 956 GGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTCTTGTACTTTCAACTTCATG 897 Query 167589 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT 167648 |||| || | || ||||||| ||| || ||| |||| || |||||| | |||| ||| Sbjct 896 ATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCATTTCATATGTTAAGCGTAGCT 838 Query 167649 GGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTG 167708 | |||| || ||| || || ||||||| ||||| ||||| ||| || ||| || Sbjct 837 AGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGCAACTTCTAGTTTG 778 Query 167709 GTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAA 167768 | | ||||||| |||| ||| || || | || |||| || |||| || || Sbjct 777 ATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATACAGATTTAGTCAAGAGAAA 718 Query 167769 GAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATC 167816 || || ||||| |||| | |||||||||||||| || || ||||| Sbjct 717 GAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCGATTGATC 670 >seq115592 Length=218 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 169041 GTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAAT 169100 || || ||| | ||||| | || ||||| | || |||||||||| ||| ||||| ||| Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 169101 ACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAA 169160 ||| | | | |||||||||| |||||||| ||| || ||| || ||||| | Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 169161 GAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCG 169220 || || || ||||| ||||| ||||| ||||| || ||||| || |||||||| |||| Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 169221 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATG 169253 || ||||| | ||||| |||||||||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATG 4 >seq96029 Length=8464 Score = 113 bits (124), Expect = 5e-20 Identities = 211/306 (69%), Gaps = 3/306 (1%) Strand=Plus/Plus Query 168525 TTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGG 168584 |||| || ||| |||| || | || ||| | ||| ||| ||||||| || |||||| Sbjct 1615 TTTGGAGGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGG 1673 Query 168585 CTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTG 168644 | | || || |||| || || |||||||| || || |||||||||||| || Sbjct 1674 TTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTG 1733 Query 168645 GAGGGCGCAAACTTTCTT-ACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTC 168703 || ||| || |||||| || | |||||| || || || || | | | ||||| Sbjct 1734 GAAGGCTGTAA-TTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATTC 1792 Query 168704 TCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGG 168763 | | || | || ||| ||||||| | |||||| ||||| | ||||||||| | || Sbjct 1793 TTTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGGG 1852 Query 168764 AGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCG 168823 || || ||| |||| || || || || || |||||| ||||| ||||||||| | | Sbjct 1853 GGGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATGTTACA 1912 Query 168824 TCAGTT 168829 ||| || Sbjct 1913 TCAATT 1918 >seq85463 Length=6098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 167792 TCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCT 167851 |||||||||||| || || ||||||||||||| || ||| ||||||| || ||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 167852 GCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGT 167892 |||||| || | || || |||||||| || ||||| |||| Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGT 4119 >seq46960 Length=374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 167133 TGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGC 167191 |||||||| ||| ||||||||||||| | | | |||| | ||||| || || || | Sbjct 22 TGGTTCGGTGTTTTGATGATCCCTACCTCATTGACCGCAA-CTTCTGTATTTATTATTAC 80 Query 167192 CTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACT 167251 |||| | | ||||||||| || || || |||||||| || |||| ||| |||| | || Sbjct 81 CTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACTTGTTTCTGGATATCT 140 Query 167252 CATGTATGGTAACAACAT 167269 | ||||| |||||||| Sbjct 141 ACTTTATGGGAACAACAT 158 >seq110392 Length=2942 Score = 82.4 bits (90), Expect = 9e-11 Identities = 161/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | | ||| | |||||||||||| | ||| |||| || | || | | Sbjct 536 GATGACTGGTTACGAAGGGGCCATTTCGTTTTTGTAGCCTGGCCTGGCCTATTGCTCTCT 477 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| ||| | | || |||||| | || | || | || || || ||| Sbjct 476 CCTTGTGCCTATTTTG-TGTAGGGGGTTGGTTCACAAGTACAACCTTTGTAACTTCATGG 418 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT-ACTGCGGCAGT 168673 ||||| || || ||||| ||||||||| |||| ||| || |||||| || | ||||| Sbjct 417 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGCTGTAA-TTTCTTAACAACCGCAGT 359 Query 168674 TAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGA 168727 | |||||| || || | | | |||||| | || | || ||| ||||||| Sbjct 358 TTCTACTCCTGCTAATAGTTTAGTGCATTCTTTATTGTTACTGTGGAGTCCTGA 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559753121853200