Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq115592 152 6e-32 seq31467 150 2e-31 seq85463 147 3e-30 seq99465 129 7e-25 seq110764 113 6e-20 seq71831 109 7e-19 seq96029 98.7 1e-15 >seq115592 Length=218 Score = 152 bits (168), Expect = 6e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 183737 GAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGA 183796 ||||||||||| || | || | || | || | ||||| ||||||| || ||||| | Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 183797 ATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAG 183856 |||| || | ||||||||| || ||||| |||||| || ||| | | ||||||| Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 183857 AAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTG 183916 ||||| || ||||| ||||| || || || || || ||||| |||||||| ||||||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 183917 CGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTT 183953 | ||| |||||| |||||||| || ||||||||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq31467 Length=18065 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 182346 GGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACA 182405 || ||||| ||||||||||| || || || || ||||| ||||| ||||| ||||| || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 182406 TCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGT 182465 ||| | || | || || || || | || || || | ||||||| | |||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 182466 CAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTC 182525 ||||| ||||| || ||||| ||||| || || ||||| ||||| | || ||||||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 182526 CAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATG 182578 ||||| || ||||||||||| ||||| || |||||||| || ||||| || Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq85463 Length=6098 Score = 147 bits (162), Expect = 3e-30 Identities = 179/244 (73%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 182499 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTG 182558 ||||| ||||| || || |||||||||||||| || ||| ||||||| ||||| || Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 182559 CACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCC 182618 |||||| |||| ||||| |||||||| || || || |||||||| | || ||| || | Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 182619 ACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 182678 ||||| ||||| || || |||||||| || ||| | ||| | ||||| |||| || Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 182679 CGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATG 182738 | || | |||| ||| | | ||||||||| |||||||| ||||||||| Sbjct 4198 C-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTATG 4250 Query 182739 CATG 182742 |||| Sbjct 4251 CATG 4254 >seq99465 Length=4513 Score = 129 bits (142), Expect = 7e-25 Identities = 216/311 (69%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 182213 TGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAAT 182272 ||| ||||| |||| | | |||||||| || || |||| ||||| | ||||| Sbjct 2945 TGTTTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAAT 3004 Query 182273 CTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCC 182332 || | || ||||||| ||| | || ||| | |||||||| || ||||||||||| Sbjct 3005 TTCTTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA--- 3061 Query 182333 CTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGG 182392 | || |||| || ||||| |||||||||| || || || || ||||| ||||| || Sbjct 3062 --TTCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGG 3119 Query 182393 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGG 182452 ||| ||||| || ||| | || | | || || || | || | || | || Sbjct 3120 TTCCTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGG 3179 Query 182453 TTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGG 182512 |||||| |||||||| | | |||| | ||||| ||||| || || |||| ||||| || Sbjct 3180 TTACAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGG 3238 Query 182513 TCGTTTGATCT 182523 || ||||||| Sbjct 3239 CCGATTGATCT 3249 >seq110764 Length=2751 Score = 113 bits (124), Expect = 6e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 182550 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTT 182609 ||||| || ||||||||||| ||||| |||||||| || || ||||||||||| || | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 182610 GGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 182656 ||| || ||| ||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq71831 Length=3823 Score = 109 bits (120), Expect = 7e-19 Identities = 211/310 (68%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 182213 TGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAAT 182272 ||| ||||| | || || | |||||||| || | |||| ||||| || ||||| Sbjct 978 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAAT 919 Query 182273 CTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCC 182332 || | || ||||||| ||| | || || | |||||||||| |||||||||| | || Sbjct 918 TTCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCC 860 Query 182333 CTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGG 182392 || || ||||| | ||||| |||||| || || || || || |||| ||||| || Sbjct 859 ATTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGG 800 Query 182393 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGG 182452 ||| |||| || ||| | || | | || || || | || || || | || Sbjct 799 TTCCTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGG 740 Query 182453 TTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGG 182512 |||| || ||||||| |||| || ||||| |||| | || ||||| ||||| || Sbjct 739 ATACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGG 680 Query 182513 TCGTTTGATC 182522 || |||||| Sbjct 679 CCGATTGATC 670 >seq96029 Length=8464 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/295 (68%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 183223 TTTGTGGGCTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGG 183282 |||| |||||| |||| || |||| || | ||| ||| |||| || || |||||| Sbjct 1615 TTTGGAGGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGG 1673 Query 183283 CTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTT 183342 | | || ||| ||||||| || |||||||||||| | | || ||||||| | Sbjct 1674 TTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTG 1733 Query 183343 GAAGGTGCTAACTTTCTT-ACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTC 183401 ||||| ||| |||||| || | || || || | | |||| | | | | ||||| Sbjct 1734 GAAGGCTGTAA-TTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATTC 1792 Query 183402 TCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGG 183461 | | ||||||| ||| ||||||| ||||| || ||| | ||||| ||| | || Sbjct 1793 TTTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGGG 1852 Query 183462 GGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATG 183516 ||| || |||| ||| || || || || || | || | || || ||||||||| Sbjct 1853 GGGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATG 1907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610763217123400