Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq85463 143 3e-29 seq115592 132 5e-26 seq110764 131 2e-25 seq99465 122 1e-22 seq71831 107 2e-18 seq46960 91.5 2e-13 seq71912 82.4 9e-11 >seq85463 Length=6098 Score = 143 bits (158), Expect = 3e-29 Identities = 202/284 (71%), Gaps = 20/284 (7%) Strand=Plus/Plus Query 165469 CACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTG 165528 || || ||||| || || | || |||||||| || ||| |||| || |||||| | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 165529 CACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGC 165588 |||||| |||| || || ||||||||||| ||||| |||||||||| || ||| | ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 165589 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGA-A 165647 |||||| ||||| || || |||||||| || ||| | || | ||||||||||| | Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 165648 CAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTAT 165707 |||| | | |||| ||| | | ||||||||| || ||||| |||||||| Sbjct 4198 CAAAGT--------CGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 165708 GCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGCTG 165751 |||| ||||| || | | | || ||||| ||||||| Sbjct 4250 GCAT---------GCTCATAAATGCTCTCTAGACCTAGCTGCTG 4284 >seq115592 Length=218 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 166739 TGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGA 166798 ||| ||||| | || || ||||||| ||| ||||| || ||| | | | |||||||||| Sbjct 196 TGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGA 137 Query 166799 ACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGT 166858 |||||||| ||| || || || | ||||||| |||||||| ||||| ||||| Sbjct 136 TGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCCATGGT 77 Query 166859 TACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTT 166918 || || ||||||| |||||| || ||||| || |||| ||| ||||| | ||||| Sbjct 76 CACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 17 Query 166919 GCATTTCTTTATG 166931 |||||||||||| Sbjct 16 ACATTTCTTTATG 4 >seq110764 Length=2751 Score = 131 bits (144), Expect = 2e-25 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 165520 CGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTT 165579 |||||| | ||||||||||| || || ||||||||||| |||||||||||||||||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 165580 GGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 165626 ||| | | ||||||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq99465 Length=4513 Score = 122 bits (134), Expect = 1e-22 Identities = 209/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 165184 GTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATC 165243 |||||| || |||| | | |||||||| ||||| |||||||||||||||| || || Sbjct 2946 GTTTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATT 3005 Query 165244 TCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCG 165303 ||| ||||||| |||| ||| | || ||| | || || ||||| ||||||||||| Sbjct 3006 TCTTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA---- 3061 Query 165304 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGA 165363 | || ||| ||||| || || ||||||| || || || ||| |||||||||||| Sbjct 3062 -TTCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGT 3120 Query 165364 AGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGT 165423 | || ||||| | || | | || || |||| || | | || | ||| Sbjct 3121 TCCTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGT 3180 Query 165424 TATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGT 165483 || || || || || | | |||| | ||||| ||||| ||||| | || ||||| || Sbjct 3181 TACAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGC 3239 Query 165484 CG 165485 || Sbjct 3240 CG 3241 >seq71831 Length=3823 Score = 107 bits (118), Expect = 2e-18 Identities = 132/179 (74%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 165184 GTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATC 165243 |||||| || | || || | |||||||| ||||| | ||||||||||||||| || || Sbjct 977 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATT 918 Query 165244 TCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCG 165303 ||| ||||||| |||| ||| | || || | || || || ||||||||||| | || Sbjct 917 TCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCA-CACATTCTTATGTACCCA 859 Query 165304 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 || || ||| | |||| ||| | |||| || || || || ||| || ||||||||| Sbjct 858 TTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGG 800 >seq46960 Length=374 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 164796 TCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTCGCCGCTACAAT 164852 |||||| | | |||||||||||| | |||||||| || ||| ||| || | Sbjct 9 TCTTTACATTAGATGGTTCGGTGTTTTGATGATCCCTACCTCATTGACCGCAACTTC--- 65 Query 164853 TTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAAC 164911 ||| ||||||| | | ||||| |||||||| || || || ||||||||||||||||||| Sbjct 66 -TGTATTTATTATTACCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAAC 124 Query 164912 CTGTCGCAGGTTCTCTAATGTACGGTAACAACAT 164945 ||| | || | |||| | || || |||||||| Sbjct 125 TTGTTTCTGGATATCTACTTTATGGGAACAACAT 158 >seq71912 Length=2485 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/162 (72%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 166998 CGTGCTTATGACTTT-GTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAAC 167056 ||||||||||| || ||||| || ||| | | || || || ||| | | ||||| || Sbjct 1571 CGTGCTTATGATTTCCGTTTCTCAGGAAATTCGTGCCGCGGAAGATTCAAAATTTGAGAC 1512 Query 167057 CTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGA 167116 || || ||||| || ||||| || || || ||||| | | ||||| || ||| || Sbjct 1511 TTTTTACACCAAAAATATTCTATTAAACGAAGGTATTCATGTTTGGACAGCGACTCAAGA 1452 Query 167117 TCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCC 167158 ||| | | |||| | | | ||||| ||||||||||||| || Sbjct 1451 TCAGCATAATGAAAATCTTATATTCTCTGAAGAGGTTCTACC 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562801266600320