Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq99465 131 2e-25 seq71831 127 2e-24 seq31467 114 2e-20 seq85463 86.0 7e-12 >seq99465 Length=4513 Score = 131 bits (144), Expect = 2e-25 Identities = 203/289 (70%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 170131 GGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATG 170190 ||||| ||| ||| || || || ||||||| ||| || || |||| || ||||||||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 170191 TTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCT 170250 | |||||| | || ||||| || ||||||||||| | |||||| ||| || || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCG 3081 Query 170251 GGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTA 170310 ||| | |||| || | || ||| || ||||| ||||| | ||||| ||| | | Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 3141 Query 170311 ATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAA 170370 ||||| | || ||||| || || | || | || ||||||||||| || | | || Sbjct 3142 ATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-AA 3200 Query 170371 GAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCT 170419 ||| | || || || || || ||| |||| |||||||| || | |||| Sbjct 3201 GAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq71831 Length=3823 Score = 127 bits (140), Expect = 2e-24 Identities = 209/300 (70%), Gaps = 1/300 (0%) Strand=Plus/Minus Query 170109 TGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTAT 170168 ||| ||||| | || || | ||||| ||| ||| | || || ||||||||||| || Sbjct 978 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAAT 919 Query 170169 CTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCC 170228 || |||| || ||||||||| | ||||| | || ||||||| |||||||||| |||| Sbjct 918 TTCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCC 860 Query 170229 ATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGG 170288 ||| |||||| | | || ||| || | | || || | || ||| | ||||| || Sbjct 859 ATTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGG 800 Query 170289 TTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGG 170348 ||| | | ||| ||| | | ||||| | || ||||| || || || || | || Sbjct 799 TTCCTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGG 740 Query 170349 ATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGG 170408 ||||| ||| | ||||| ||||||| || || || | | || ||||| |||||||| Sbjct 739 ATACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGG 680 >seq31467 Length=18065 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 170242 GGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACA 170301 || || |||||| | ||||| || | || ||| || ||||| ||||| | ||||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 170302 TCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGA 170361 ||| | | ||| | || || ||||| || || || || | || |||| || ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 170362 CAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTC 170421 ||||| |||||||| || || || || || || ||||| |||||| | || | |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 170422 CAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCT 170469 ||||||||||| || ||||| |||| | |||||||| || ||| Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCT 5251 >seq85463 Length=6098 Score = 86.0 bits (94), Expect = 7e-12 Identities = 170/247 (69%), Gaps = 15/247 (6%) Strand=Plus/Plus Query 170395 CATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTT 170454 ||||| |||||||| || | ||||||||||||||||| || |||| |||| | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGC 170514 |||||| |||| ||| | | |||||||| | || ||||| ||| | | ||||| || Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGC--TAGGTATCAGC 4137 Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGT 170574 ||||| || || || ||||| || || || ||| | || ||||| | ||| | Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATC---CGTAG-TTGAT-AGTC 4192 Query 170575 AAAGT---AGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTA 170631 ||||| ||| | |||| || | | ||| | || ||||| ||||| ||||| Sbjct 4193 AAAGTCAAAGT-----CGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTT 4247 Query 170632 ATGCATG 170638 ||||||| Sbjct 4248 ATGCATG 4254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581959207799200