Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq99159 118 7e-22 seq95628 96.9 2e-15 seq66988 96.9 2e-15 seq70367 95.1 8e-15 seq109031 93.3 3e-14 seq69221 89.7 3e-13 >seq99159 Length=5808 Score = 118 bits (130), Expect = 7e-22 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | ||||| ||| |||| |||| || || |||||||| || ||||||| Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| |||| || ||||| || || ||||| || | | |||||||| | || Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCA--CCGGCCTC-- 34930 | ||| |||||||| |||||| ||| || || |||| ||| ||| ||| Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTAGCTTTCAC--AT--TATCAATTGTGTCCGAACTCTC 1754 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | |||||||||||| |||||||| ||||| |||||||||||||| Sbjct 1755 AACCTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 >seq95628 Length=1400 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || ||||||| |||||||| | ||| || ||||| ||||| || || | Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| || ||||| || |||||||| |||| | ||||| || | || Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||||||| ||||||| || || | |||| ||| | ||||| Sbjct 113 ATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAACC 54 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || ||||| || ||||| |||||| Sbjct 53 TCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCATA 6 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| | |||| | | | |||| |||| ||| || || ||||| Sbjct 425 TCTTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAG 366 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | ||||||||||| |||||| ||||| || Sbjct 365 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGAATCTTAGCCTTGAC--AT 308 Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| || ||| || || | ||| ||||| || || || || ||||| Sbjct 307 --TGTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGTGTCTT 250 Query 34967 CACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 249 GACAAAAATCTGCAT 235 >seq66988 Length=1372 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || || |||| |||| ||||| | || || ||||| |||||||| || Sbjct 177 TTCCTTCTGAATATTGTAATCCGCAAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAA 236 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || |||| | || ||||| || |||||| |||||| Sbjct 237 GATCAGGCGCTGCTGATCGGGCGGAATTCCTTCCTTATCTTGGATCTTCGCCTTGACGTT 296 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| ||| || |||| || || || ||||| || || || ||||| Sbjct 297 GTCGATGGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCAC 356 Query 34970 AAAGATCTGCATATTC 34985 ||||||||||| ||| Sbjct 357 GAAGATCTGCATCTTC 372 >seq70367 Length=2979 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 ||||| |||||||| | || |||||||||||||| ||||||| | | | || | Sbjct 273 CCTCAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCC 214 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| || ||||| ||||||||||| || || | ||||| || | || | || ||||| Sbjct 213 ATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGGAATGCCTTCCTT 154 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 ||| ||||| || ||| | || | || | ||| || || | ||| || Sbjct 153 GTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCGACCTCAAGGGTGAT 94 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || || || || ||||| ||||||||||||||| Sbjct 93 GGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCATA 57 >seq109031 Length=8095 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| ||||| || | |||| | | | |||| || ||||| || || ||||| Sbjct 495 TCCTTCTGAATATTATAATCAGCAAGGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAAG 436 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| | |||||||| |||| | || |||||||| |||||| || || || Sbjct 435 ATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTCAC--AT 378 Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || | ||| || ||| || || | || || || || ||||| |||||||| Sbjct 377 --TATCAATGGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCCGTCAGAGTCTT 320 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 319 CACAAAGATCTGCAT 305 >seq69221 Length=10640 Score = 89.7 bits (98), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 34748 ATCATT--TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 |||||| ||||||||| | ||||||||| | ||||| ||| |||||| || |||||| Sbjct 6020 ATCATTGTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGGATGTTA 5961 Query 34806 TAGTC--CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCT 34863 ||||| | |||| ||| |||| ||||| ||||| || |||||||| || | |||| Sbjct 5960 TAGTCTGCCAAAG--TTCTACCATCTTCCAGTTGTTTACCAGCAAATATAAGCCTCTGCT 5903 Query 34864 GGTC 34867 |||| Sbjct 5902 GGTC 5899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324150938111304