Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq31467 154 2e-32 seq99465 152 6e-32 seq71831 132 5e-26 seq85463 93.3 5e-14 >seq31467 Length=18065 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 84171 CAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATA 84230 |||||||| | || ||||| | |||||| |||||||| |||||| |||||||| Sbjct 5246 CAAGCAGCTAGAAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATC 5305 Query 84231 AGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAAC 84290 | || | ||||| || ||||| || || |||||||||||||| || ||||||||| | Sbjct 5306 AATCGTCTAAAGTAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGGAT 5365 Query 84291 TTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACA 84350 ||||||| | || || |||||||||| ||||| | ||| | | |||||| || Sbjct 5366 CTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCCGATCAAACTAGAAGTTACC 5425 Query 84351 AGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403 | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 5426 AAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCC 5478 >seq99465 Length=4513 Score = 152 bits (168), Expect = 6e-32 Identities = 208/289 (72%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 84226 AGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGAC 84285 |||| | || || ||||| || | ||||| || |||||||||| ||| | | | |||| Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGAC 3191 Query 84286 CGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAG 84345 |||| |||||||| | || | |||||||||| |||| | ||| | | ||||| Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131 Query 84346 TGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCA 84405 | || | ||||||||||| ||| |||||| | || |||||||||| || || || Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071 Query 84406 ACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGA 84465 |||| ||| ||||||||| || ||||| || |||| ||| |||| |||| |||||| Sbjct 3070 ACATATGA-----ATGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016 Query 84466 ACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCC 84514 | || | || || || | ||||| |||||||| ||| ||||| || Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACC 2967 >seq71831 Length=3823 Score = 132 bits (146), Expect = 5e-26 Identities = 201/282 (71%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 84234 CGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTG 84293 || || ||||| || ||||| | | |||||||||||||| | ||||||| || || Sbjct 677 CGGCCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACTAAATCTG 736 Query 84294 TAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAG-TGACAAG 84352 || || | || || |||||||||| |||| | ||| | | ||||| || |||| Sbjct 737 TATCCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGTTGCCAAG 796 Query 84353 TGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTG 84412 ||||||||||| || |||||| | || || |||||| ||| || | ||||| || Sbjct 797 -GAACCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAACATATG 855 Query 84413 AAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCC 84472 ||| || | |||||| ||| | || || |||| || |||| |||| ||||||| || | Sbjct 856 AAATGGGTACATAAGAATG-TGTGCTCAGCCTAAAATACAATCATGAAGTTGAAAGTACA 914 Query 84473 TGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCC 84514 || || || || ||||| |||||| | ||| ||||| || Sbjct 915 AGAAATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACC 956 >seq85463 Length=6098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/245 (69%), Gaps = 13/245 (5%) Strand=Plus/Minus Query 84009 TGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAGGTATT-GACAAC 84067 ||||| ||||| |||||||| ||||| || | | ||| |||| | || ||| Sbjct 4252 TGCATAACTTCTATACCAAGGTTAGCACGGTTGATGATATCAACCCACGACTTTGAC--- 4196 Query 84068 ACGGTTTTGGCTATCGACAA-GACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCA 84126 |||| ||||| || | | | || || || || || ||||| ||||| || |||| Sbjct 4195 -----TTTGACTATCAACTACGGATTTG-TTAAAATTGAAACCATTTAGATTGAAGGCCA 4142 Query 84127 TGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAA 84186 || ||| | ||| || ||| |||||||| || || || ||||||||||| | || | Sbjct 4141 TGACGCTGATACCTAG--CAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACGA 4084 Query 84187 AGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGC 84246 |||| | |||||| |||| ||| |||||| |||||||| | || || ||||| | Sbjct 4083 AGTGTAACGAACGAGAGTTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAAC 4024 Query 84247 CGTGA 84251 | ||| Sbjct 4023 CATGA 4019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570402457746440