Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq21024 104 3e-17 seq103549 98.7 1e-15 >seq21024 Length=7623 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | |||||| | || ||||| ||||| | |||||| || ||| || | | | Sbjct 2794 GTTCCAGCATTAAAAAGAGTAGGAGAAGCATGTGTGAACCATCGCTGTGACAAAAGATGA 2735 Query 48660 TATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAA 48718 ||||||| || ||||||| ||||| | ||| || || || | || |||||||| || Sbjct 2734 TATGTTTGTATCGCAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACACGCATCAA 2676 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | || |||||||| |||| ||| || || || || ||||| || |||| | Sbjct 2675 CATGTGCTGTGGTCTTTCTACAACCTTGCCTTTGATCTTTAACAGATAGGACCTTTCAAG 2616 Query 48779 TGTTTTAAAACCAAAA 48794 ||||||||||||||| Sbjct 2615 AGTTTTAAAACCAAAA 2600 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || || || || | ||||| ||||| | || |||||| | |||||| ||||| ||| Sbjct 3167 CCGCCCTGGTCCACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAATGCCA 3108 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 ||||||| ||||| ||||| ||||||||||| | || | |||||| || || Sbjct 3107 TTTGATAATCCATTTGTTCCACGTATATAACTTCCTGTGGCACGGATATTATGAACAGAC 3048 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| |||| |||||| ||||| ||||| || || Sbjct 3047 ACACCAATACCTCCAGCTGATTTGCTAATTACAGCACATTCCTTAAGTGTATCGTATATG 2988 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || ||||||||||| |||| Sbjct 2987 CCCTCAATACTATCATCCTTCAT 2965 >seq103549 Length=14649 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | |||||| | || ||||| |||||| | |||||| | || | | | | Sbjct 7486 GTCCCAGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCATCGTTGCGACAGAAGATGA 7427 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||| || |||||||| ||||| | ||| || || | ||| || ||||||||| Sbjct 7426 TATGTTTTTATCACAGAATCAATATCATCCTTATGGATTCCAACAGAAACTCGCATTAAC 7367 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 || | ||| || |||||||||| ||| | | || || ||||| || |||| | Sbjct 7366 ATGTGTTGTGGCCTTTCAACAACCTTGCCTTGAACCTTTAACAGATAAGACCTTTCAAGC 7307 Query 48780 GTTTTAAAACCAAAATA 48796 ||||||||||||||||| Sbjct 7306 GTTTTAAAACCAAAATA 7290 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || || || || | ||||| ||||| | || |||||| | |||||| |||| ||| Sbjct 7883 CCACCCTGGTCAACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACGCCA 7824 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 ||||| | ||||| ||||| ||||||||||| |||| | |||||| | || Sbjct 7823 TTTGACAATCCATTTGTTCCACGTATATAACTTCCTGTAGCACGAATATTATGGACGGAC 7764 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || |||| || | |||||| ||||| |||||||| || Sbjct 7763 ACACCAATCCCTCCAGCTGATTTACTAATAACAGCACATTCCTTAAGTGTATCATATATG 7704 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || ||||||||||| |||| Sbjct 7703 CCCTCAATACTATCATCCTTCAT 7681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561251633264520