Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq99465 120 9e-23
seq71831 114 4e-21
seq85463 80.6 8e-11
>seq99465
Length=4513
Score = 120 bits (132), Expect = 9e-23
Identities = 214/311 (69%), Gaps = 6/311 (2%)
Strand=Plus/Minus
Query 36226 AGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGC 36285
|||| | || |||||||| |||| || || || || ||||| | |||| | | || |
Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGAC 3191
Query 36286 CGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAG 36345
||||||| || || | || || |||| | || |||| | || | ||||
Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131
Query 36346 TAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGA 36405
| || | || ||||||||| ||||| | || ||||||| || || || ||
Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071
Query 36406 GCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGA 36465
|||||| | |||||||| ||||| || || |||| || |||| ||| || ||||
Sbjct 3070 ACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016
Query 36466 AAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 36525
|||| | ||||| || |||||||||||||||| ||||| ||||| |||| ||||||
Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAATTTGGTAGA 2956
Query 36526 CTAAGAATACA 36536
||||| |||
Sbjct 2955 TCAAGAAAACA 2945
>seq71831
Length=3823
Score = 114 bits (126), Expect = 4e-21
Identities = 206/300 (69%), Gaps = 1/300 (0%)
Strand=Plus/Plus
Query 36237 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 36296
|||||||| |||||||| | | || ||||| || |||| ||||| | ||| | |||
Sbjct 680 CCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACTAAATCTGTAT 739
Query 36297 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTT 36356
|| | || ||||||| | || |||| | || | ||||| | |
Sbjct 740 CCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGTTGCCAAGGAA 799
Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416
|| |||||| || ||||| | || || |||| | || || | | |||||| ||
Sbjct 800 CCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAACATATGAAAT 859
Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476
|| | |||||| || | ||| || |||| ||| |||| ||| || |||||||| | |||
Sbjct 860 GGGTACATAAGAATGT-GTGCTCAGCCTAAAATACAATCATGAAGTTGAAAGTACAAGAA 918
Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536
|| || ||||||||||||||| | ||||| ||||| |||| ||||| | ||||| |||
Sbjct 919 ATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACA 978
>seq85463
Length=6098
Score = 80.6 bits (88), Expect = 8e-11
Identities = 166/246 (67%), Gaps = 11/246 (4%)
Strand=Plus/Minus
Query 36007 CATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGA 36066
||||||||||||| || || | || |||||||| | || ||| ||| ||||
Sbjct 4254 CATGCATAACTTCTATACCAAGGTTAGCACGGTTGATGATATCAACCC--------ACGA 4203
Query 36067 CTCTTCCGTTG-GAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCC 36125
|| | | ||| |||||| || || | || || || || || || ||||| || |||
Sbjct 4202 CTTTGACTTTGACTATCAACTACGGATTTGTTAAAATTGAAACCATTTAGATTGAAGGCC 4143
Query 36126 ATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAG 36185
|| | || || |||| || | ||| || | || ||||||||||| |||| |
Sbjct 4142 ATGACGCTGATACC--TAGCAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACG 4085
Query 36186 AAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAG 36245
|| ||||| || || | || |||||||| |||||||| | || ||||||||
Sbjct 4084 AAGTGTAACGAACGAGAGTTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAA 4025
Query 36246 CCATGA 36251
||||||
Sbjct 4024 CCATGA 4019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150236441694522
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |