Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq99465 120 9e-23 seq71831 114 4e-21 seq85463 80.6 8e-11 >seq99465 Length=4513 Score = 120 bits (132), Expect = 9e-23 Identities = 214/311 (69%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 36226 AGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGC 36285 |||| | || |||||||| |||| || || || || ||||| | |||| | | || | Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGAC 3191 Query 36286 CGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAG 36345 ||||||| || || | || || |||| | || |||| | || | |||| Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131 Query 36346 TAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGA 36405 | || | || ||||||||| ||||| | || ||||||| || || || || Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071 Query 36406 GCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGA 36465 |||||| | |||||||| ||||| || || |||| || |||| ||| || |||| Sbjct 3070 ACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016 Query 36466 AAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 36525 |||| | ||||| || |||||||||||||||| ||||| ||||| |||| |||||| Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAATTTGGTAGA 2956 Query 36526 CTAAGAATACA 36536 ||||| ||| Sbjct 2955 TCAAGAAAACA 2945 >seq71831 Length=3823 Score = 114 bits (126), Expect = 4e-21 Identities = 206/300 (69%), Gaps = 1/300 (0%) Strand=Plus/Plus Query 36237 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 36296 |||||||| |||||||| | | || ||||| || |||| ||||| | ||| | ||| Sbjct 680 CCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACTAAATCTGTAT 739 Query 36297 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTT 36356 || | || ||||||| | || |||| | || | ||||| | | Sbjct 740 CCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGTTGCCAAGGAA 799 Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || |||||| || ||||| | || || |||| | || || | | |||||| || Sbjct 800 CCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAACATATGAAAT 859 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 || | |||||| || | ||| || |||| ||| |||| ||| || |||||||| | ||| Sbjct 860 GGGTACATAAGAATGT-GTGCTCAGCCTAAAATACAATCATGAAGTTGAAAGTACAAGAA 918 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || ||||||||||||||| | ||||| ||||| |||| ||||| | ||||| ||| Sbjct 919 ATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACA 978 >seq85463 Length=6098 Score = 80.6 bits (88), Expect = 8e-11 Identities = 166/246 (67%), Gaps = 11/246 (4%) Strand=Plus/Minus Query 36007 CATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGA 36066 ||||||||||||| || || | || |||||||| | || ||| ||| |||| Sbjct 4254 CATGCATAACTTCTATACCAAGGTTAGCACGGTTGATGATATCAACCC--------ACGA 4203 Query 36067 CTCTTCCGTTG-GAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCC 36125 || | | ||| |||||| || || | || || || || || || ||||| || ||| Sbjct 4202 CTTTGACTTTGACTATCAACTACGGATTTGTTAAAATTGAAACCATTTAGATTGAAGGCC 4143 Query 36126 ATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAG 36185 || | || || |||| || | ||| || | || ||||||||||| |||| | Sbjct 4142 ATGACGCTGATACC--TAGCAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACG 4085 Query 36186 AAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAG 36245 || ||||| || || | || |||||||| |||||||| | || |||||||| Sbjct 4084 AAGTGTAACGAACGAGAGTTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAA 4025 Query 36246 CCATGA 36251 |||||| Sbjct 4024 CCATGA 4019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150236441694522