Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq31467 102 2e-17 seq99465 100 9e-17 seq71831 100 9e-17 >seq31467 Length=18065 Score = 102 bits (112), Expect = 2e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 5393 CAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATG 5452 |||| ||| || ||||| ||||| ||| ||||| || |||||||| |||||||| Sbjct 5246 CAAGCAGCTAGAAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATC 5305 Query 5453 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAAT 5512 | || | |||||| |||||||| || || || ||||| |||||||||||||| ||| || Sbjct 5306 AATCGTCTAAAGTAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGGAT 5365 Query 5513 TTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACA 5572 | || || | || ||| | | || ||||| | || | |||||| || Sbjct 5366 CTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCCGATCAAACTAGAAGTTACC 5425 Query 5573 AGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCG 5626 | |||||||||||| ||| | | || |||||||| ||||| || ||| Sbjct 5426 AAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCG 5479 >seq99465 Length=4513 Score = 100 bits (110), Expect = 9e-17 Identities = 199/292 (68%), Gaps = 12/292 (4%) Strand=Plus/Minus Query 5448 AGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGC 5507 |||| | || |||||||| |||| || || || || ||||| | ||||| | || | | Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTTTCCCT-GAC 3191 Query 5508 CGAATTTATATCCATAGTTCTGAGAAGT---AAGCCCAGTTGTTTCACGAATGAGCGAAG 5564 ||||||| || || | || || ||| | | || |||| | || | || Sbjct 3190 CGAATTTGTAACCTTCATT---AGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAG 3134 Query 5565 AAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACAC 5624 |||| || | |||||||||||| ||| | | || ||||||| || || || | Sbjct 3133 AAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGC 3074 Query 5625 CGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGT 5684 | ||| || | |||||||| ||||| || || |||| |||||| | ||| |||| Sbjct 3073 CTCACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGT 3019 Query 5685 TAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCC 5736 | ||||||| ||| || || |||||||||||||| |||||||| || || Sbjct 3018 TGAAAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACC 2967 >seq71831 Length=3823 Score = 100 bits (110), Expect = 9e-17 Identities = 195/287 (68%), Gaps = 1/287 (0%) Strand=Plus/Plus Query 5459 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATAT 5518 |||||||| |||||||| | | || ||||| ||||||| |||||| | ||| | ||| Sbjct 680 CCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACTAAATCTGTAT 739 Query 5519 CCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTT 5578 || | || ||| | | || |||| | || | |||||| | | Sbjct 740 CCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGTTGCCAAGGAA 799 Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 ||||||||| || ||| | | || || |||| | ||| || | | ||| || || Sbjct 800 CCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAACATATGAAAT 859 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || | |||||| || | ||| || |||| ||||| | ||| ||||| ||||||| ||| Sbjct 860 GGGTACATAAGAATGT-GTGCTCAGCCTAAAATACAATCATGAAGTTGAAAGTACAAGAA 918 Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTA 5745 || || ||||||||||||||| |||||||| || || | ||||| Sbjct 919 ATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTA 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152428461580998