Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq99465 120 9e-23 seq71831 114 4e-21 seq85463 84.2 7e-12 >seq99465 Length=4513 Score = 120 bits (132), Expect = 9e-23 Identities = 214/311 (69%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 25706 AGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGC 25765 |||| | || |||||||| |||| || || || || ||||| | |||| | | || | Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGAC 3191 Query 25766 CGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAG 25825 ||||||| || || | || || |||| | || |||| | || | |||| Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131 Query 25826 TAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGA 25885 | || | || ||||||||| ||||| | || ||||||| || || || || Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071 Query 25886 GCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGA 25945 |||||| | |||||||| ||||| || || |||| || |||| ||| || |||| Sbjct 3070 ACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016 Query 25946 AAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 26005 |||| | ||||| || |||||||||||||||| ||||| ||||| |||| |||||| Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAATTTGGTAGA 2956 Query 26006 CTAAGAATACA 26016 ||||| ||| Sbjct 2955 TCAAGAAAACA 2945 >seq71831 Length=3823 Score = 114 bits (126), Expect = 4e-21 Identities = 206/300 (69%), Gaps = 1/300 (0%) Strand=Plus/Plus Query 25717 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 25776 |||||||| |||||||| | | || ||||| || |||| ||||| | ||| | ||| Sbjct 680 CCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACTAAATCTGTAT 739 Query 25777 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTT 25836 || | || ||||||| | || |||| | || | ||||| | | Sbjct 740 CCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGTTGCCAAGGAA 799 Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || |||||| || ||||| | || || |||| | || || | | |||||| || Sbjct 800 CCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAACATATGAAAT 859 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 || | |||||| || | ||| || |||| ||| |||| ||| || |||||||| | ||| Sbjct 860 GGGTACATAAGAATGT-GTGCTCAGCCTAAAATACAATCATGAAGTTGAAAGTACAAGAA 918 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || ||||||||||||||| | ||||| ||||| |||| ||||| | ||||| ||| Sbjct 919 ATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACA 978 >seq85463 Length=6098 Score = 84.2 bits (92), Expect = 7e-12 Identities = 167/246 (68%), Gaps = 11/246 (4%) Strand=Plus/Minus Query 25487 CATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGA 25546 ||||||||||||| || || | || |||||||| | || ||| |||| ||| Sbjct 4254 CATGCATAACTTCTATACCAAGGTTAGCACGGTTGATGATATCAACCCA--------CGA 4203 Query 25547 CTCTTCCGTTGGA-ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCC 25605 || | | ||| |||||| || || | || || || || || || ||||| || ||| Sbjct 4202 CTTTGACTTTGACTATCAACTACGGATTTGTTAAAATTGAAACCATTTAGATTGAAGGCC 4143 Query 25606 ATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAG 25665 || | || || |||| || | ||| || | || ||||||||||| |||| | Sbjct 4142 ATGACGCTGATACC--TAGCAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACG 4085 Query 25666 AAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAG 25725 || ||||| ||| || | || |||||||| |||||||| | || |||||||| Sbjct 4084 AAGTGTAACGAACGAGAGTTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAA 4025 Query 25726 CCATGA 25731 |||||| Sbjct 4024 CCATGA 4019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151773411906468