Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq111813 134 1e-26 seq66988 129 5e-25 seq99159 118 8e-22 seq109031 114 1e-20 seq55416 107 2e-18 seq82767 104 2e-17 seq117762 102 6e-17 seq103400 98.7 8e-16 seq95628 98.7 8e-16 seq9178 95.1 1e-14 seq69221 93.3 3e-14 seq70367 89.7 4e-13 seq23260 84.2 2e-11 seq109030 82.4 6e-11 >seq111813 Length=4153 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| ||||| | || | ||||||||| || || || || || ||||| ||||| Sbjct 1101 CCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 1160 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | |||||||| |||||||||| ||||| || || || ||| Sbjct 1161 AGCGTCCAGCCATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGA 1220 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || ||||| || ||| ||| | || | ||||| || | ||||| Sbjct 1221 ATGCCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCACC 1280 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || || || || ||||| || | || |||||||| Sbjct 1281 TCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCAT 1327 Score = 132 bits (146), Expect = 4e-26 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG-ATAGTTCTGGCATCGTCCAATT 101324 ||||||||| ||||| ||||| || ||||||| || | |||||| |||| |||| || Sbjct 1352 ATGAAGGGTGGATTCCTTTTGAATGCTGTAATCTGCCTAGTGTTCTGCCATCTTCCAGTT 1411 Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 |||| || ||||| | || || || || ||||| || || ||||||||||||| |||| Sbjct 1412 GCTTCCCAGCAAAGAAAAATCGTTGCTGCTCGGGGGGGATCCCTTCTTTATCTTAGATTT 1471 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | || || | || | |||||| || |||| |||||||| || | ||| ||||| | Sbjct 1472 TGGCCTTGACGTTGTCGATAGTGTCTGAGCTTTCAACTTCAAGGGTTATCGTCTTGCCAG 1531 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | |||||| || || |||||||| Sbjct 1532 CAAGAGTTTTCACGAAAATCTGCAT 1556 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||||||||| ||||||||||| || | |||||| |||| || | || Sbjct 1787 ATGGAGAGTGGATTCTTTTTGGATATTGTAATCCGCAAGGGTTCTGCCATCATCGAGCTG 1846 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || ||||| | ||| || || || ||||| ||||| || |||||||| || Sbjct 1847 CTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 1906 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | ||||| || | || || || || |||| || || || || Sbjct 1907 AGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATTGTCTTTCCAGT 1966 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 1967 AAGTGTCTTAACAAAGATTTGCAT 1990 >seq66988 Length=1372 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | |||||| || ||||| || || ||||||||||| || | |||| | Sbjct 153 ACGAAGAACGAGATGAAGAGTCGATTCCTTCTGAATATTGTAATCCGCAAGGGTTCGTCC 212 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||| || || || |||| ||||| |||||||||||||| ||||| || Sbjct 213 GTCTTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGCGGAATTCCTTCCTT 272 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || || || || | || | || ||||| | || || || ||||||| Sbjct 273 ATCTTGGATCTTCGCCTTGACGTTGTCGATGGTATCAGAACTCTCGACCTCGAGAGTGAT 332 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || ||||||| ||||| || || |||||||| Sbjct 333 CGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 101330 CCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 101389 || || || ||||||||||| ||||| |||||||| || |||||||| ||||| ||| Sbjct 1 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATCCCCTCTTTATCCTGAATCTTTGCC 60 Query 101390 TTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAA 101449 || || | || | ||||| || | || || || ||||||| || || || |||| Sbjct 61 TTGACGTTATCGATTGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTCTTCCCCGTTAGT 120 Query 101450 GTTTTTACAAATATCTGCAT 101469 ||||| || || |||||||| Sbjct 121 GTTTTAACGAAGATCTGCAT 140 >seq99159 Length=5808 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| || | ||| || |||| ||||| ||| Sbjct 1375 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCTGCAAGAGTCCTTCCATCTTCCAACTGC 1434 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| |||||||||| | |||||| || || || || || || ||||| || || || Sbjct 1435 TTACCAGCAAATATCAGCCTCTGTTGGTCCGGTGGGATACCCTCCTTATCCTGTATCTTC 1494 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | ||||| || | |||| ||| || || || Sbjct 1495 GCCTTCACATTGTCGATTGTGTCCGAACTCTCCACCTCCAATGTGATCGTCTTCCCAGTC 1554 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 1555 AGCGTCTTCACAAATATCTGCAT 1577 >seq109031 Length=8095 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || ||||| ||||| || | || || |||| || | ||| Sbjct 507 TGGAGAGTCGACTCCTTCTGAATATTATAATCAGCAAGGGTCCTTCCATCCTCGAGCTGC 448 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || || | ||| || || |||||||||||||| || |||||||| ||| Sbjct 447 TTCCCAGCAAAGATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTGAATCTTT 388 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | ||||| || | ||||| ||| || || || Sbjct 387 GCCTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCCGTC 328 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||||||| Sbjct 327 AGAGTCTTCACAAAGATCTGCAT 305 >seq55416 Length=9261 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | | |||||| | ||||| || |||||||| || ||||||||||| || Sbjct 3910 CCTCCCCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCC 3969 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| |||||||| ||||| |||||||| | | ||| ||||| || || Sbjct 3970 AAGGTTCTACCATCTTCCAATTGTTTACCGGCAAATATTAGCCTCTGCTGATCAGGAGGT 4029 Query 101363 ATGCCTTCTTTATCTTG 101379 ||||||||||| || || Sbjct 4030 ATGCCTTCTTTGTCCTG 4046 >seq82767 Length=6942 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | |||||| | ||||| || |||||||| || ||||||||||| || Sbjct 3849 CCTCCTCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCC 3908 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| ||||| || ||||| |||||||| | | ||| || || || || Sbjct 3909 AAGGTTCTACCATCTTCCAACTGTTTACCAGCAAATATTAGCCTCTGCTGGTCAGGAGGT 3968 Query 101363 ATGCCTTCTTTATCTTG 101379 ||||||||||| || || Sbjct 3969 ATGCCTTCTTTGTCCTG 3985 >seq117762 Length=309 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| ||||| ||||| || || || |||||||| || | || | |||| || Sbjct 46 ACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGTCCATCCTCG 105 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| ||||| | ||| || || || |||||||| || || || || Sbjct 106 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 165 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | || ||||||||||||| || ||| Sbjct 166 ATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGCTCTCGACTTCAAGAGTGATGGTCTTG 225 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || || || || ||||| Sbjct 226 CCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq103400 Length=1682 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || |||| ||||| || || |||||||| ||||| || || |||||||| || Sbjct 1 GCGAAGATCAGCCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTC 60 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||||| || | ||||| || | || ||||| || |||| |||||||||||||| ||| Sbjct 61 ACAATGTCGATTGTGTCGGAACTCTCGACTTCGAGGGTGATCGTTTTGCCGGTTAGGGTT 120 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 121 TTCACGAAGATCTGCAT 137 >seq95628 Length=1400 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | | || || || ||||| || || || || || ||||||||||| Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || ||||| || || | ||| ||||| || ||| Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || ||||| || || ||| | || | |||||||| |||| || Sbjct 113 ATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAACC 54 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || ||||| | || || || || || ||||| Sbjct 53 TCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 >seq9178 Length=1540 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || || || || || ||||| || | || | |||| |||| |||||||| Sbjct 152 GTTGACTCCTTCTGGATGTTATAATCAGCAAGTGTACGCCCATCTTCCAGCTGCTTACCA 93 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||| | ||| || || |||||||||||||| ||||||||||| ||| || Sbjct 92 GCAAAGATCAACCTCTGCTGGTCAGGCGGAATGCCTTCCTTATCTTGAATCTTTGCCTTC 33 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTC 101424 ||| | || || ||||| || | ||||| || Sbjct 32 ACATTATCAACGGTGTCGGAGCTCTCCACCTC 1 >seq69221 Length=10640 Score = 93.3 bits (102), Expect = 3e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | | ||||| | ||||| || ||||||||||| || || || || | Sbjct 6013 TTCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGGATGTTATAGTCTG 5954 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | |||||| |||| |||| ||| ||||| |||||||| | | ||| || || || | Sbjct 5953 CCAAAGTTCTACCATCTTCCAGTTGTTTACCAGCAAATATAAGCCTCTGCTGGTCAGGGG 5894 Query 101361 GAATGCCTTCTTTATCTTG 101379 | || ||||||||||| || Sbjct 5893 GGATACCTTCTTTATCCTG 5875 >seq70367 Length=2979 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || ||||| || || ||||| || || | || | | |||| || Sbjct 266 ACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCATCCTCA 207 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| || | | ||| ||||| || ||||||||||| || || || Sbjct 206 AGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTGG 147 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | |||||| || | || || ||||| |||| || || Sbjct 146 ATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTC 87 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 86 CCTGTAAGGGTCTTGACAAAGATCTGCAT 58 >seq23260 Length=14596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339 |||| || |||||||||||||||| ||| | | |||| |||| ||||| || || || | Sbjct 10763 CTTTCTGAATATTGTAATCGGCGAGAGTCCGGCCATCTTCCAGCTGCTTTCCGGCGAAAA 10704 Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCT 101368 ||| |||||| ||||| |||||||| ||| Sbjct 10703 TCAGACGCTGCTGATCCGGCGGAATTCCT 10675 >seq109030 Length=217 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || || ||||| ||||| ||||||||||| || | |||||| | || || Sbjct 115 AACGAGATGGAGAGTCGATTCCTTTTGGATATTGTAATCTGCTAGGGTTCTGCCGTCTTC 56 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 | ||||| || ||||| || | ||||| ||||| || ||||| ||||| ||| Sbjct 55 GAGCTGCTTCCCAGCAAAGATTAGGCGCTGCTGATCCGGTGGAATTCCTTCCTTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395689217361501