Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq111813 109 4e-19 seq99159 105 5e-18 seq109031 96.9 3e-15 seq95628 84.2 2e-11 >seq111813 Length=4153 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| ||||| ||| || || ||| || || || ||||| || | ||| | | | Sbjct 1113 CGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGCGTCCAGCCA 1172 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | ||||||||| ||||||||||| ||||| || |||| |||| ||| |||||| Sbjct 1173 TCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGAATGCCTTCCTTG 1232 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||| ||| | | | || || ||||||||||| || || Sbjct 1233 TCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAAAGTGATG 1292 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||||||| || | ||||||||||| Sbjct 1293 GTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCAT 1327 >seq99159 Length=5808 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48551 CCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATC 48610 ||||||||||| ||| || || ||| || ||||||||||| || | |||| | || | Sbjct 1590 CCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCTAGAGTGCGTCC 1649 Query 48611 GTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTT 48670 || || | |||||| || ||||| |||| | ||| || |||| ||| | || ||||| Sbjct 1650 ATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGTATCCCTTCCTT 1709 Query 48671 GTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 ||| |||||| ||| ||| | | | | || || ||| ||||||| || || Sbjct 1710 GTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAACCTCCAGGGTTAT 1769 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| | || || ||||| |||||||| Sbjct 1770 GGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || || |||||||| | ||| | | | || |||||||||||||| ||||| Sbjct 1386 CTCTTTCTGGATGTTGTAATCTGCAAGAGTCCTTCCATCTTCCAACTGCTTACCAGCAAA 1445 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||||| | |||||| |||| || | |||||||| || ||||| || ||| Sbjct 1446 TATCAGCCTCTGTTGGTCCGGTGGGATACCCTCCTTATCCTGTATCTTCGCCTTCACATT 1505 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || ||||| || || |||| || || || Sbjct 1506 GTCGATTGTGTCCGAACTCTCCACCTCCAATGTGATCGTCTTCCCAGTCAGCGTCTTCAC 1565 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 1566 AAATATCTGCATC 1578 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| |||||||||| ||| | || | || || | |||||| || ||||| Sbjct 2070 CTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATCTTCGAGCTGCTTTCCAGCAAA 2129 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || ||| || || | ||||| |||||||||||| |||||| || ||| Sbjct 2130 GATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTAACATT 2189 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || |||||| || | ||| || || || ||||| || || || || Sbjct 2190 GTCGATGGTGTCGGAACTCTCCACTTCGAGCGTGATTGTCTTGCCCGTTAAGGTCTTAAC 2249 Query 48755 AAAAATCTGCAT 48766 ||| || ||||| Sbjct 2250 AAAGATTTGCAT 2261 >seq109031 Length=8095 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGA---CTTCGATCGTCGTCCAACTGCTTACCGGC 48631 ||| || |||||||| ||||||| || |||| ||| ||| | |||||| || || Sbjct 496 CTCCTTCTGAATATTATAATCAGCAAGGGTCCTTCCATCCTCG---AGCTGCTTCCCAGC 440 Query 48632 AAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTAC 48691 ||| || | | ||| || |||| |||| ||| |||||||| ||||||| || || Sbjct 439 AAAGATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTCAC 380 Query 48692 AGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTT 48751 | | | | | || || ||||||||||| || ||||| || ||||||| ||| || Sbjct 379 ATTATCAATGGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCCGTCAGAGTCTT 320 Query 48752 TACAAAAATCTGCAT 48766 ||||| |||||||| Sbjct 319 CACAAAGATCTGCAT 305 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | ||||| ||| | || ||| |||||||| ||||| || | | | | | | Sbjct 294 AGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTA 235 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || |||||||| ||||| | ||| || |||| || | |||||| Sbjct 234 CCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCC 175 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || || |||||| |||| ||| Sbjct 174 TTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACTTCCAGCGTG 115 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || |||||||| || ||||| ||||||||| Sbjct 114 ATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATC 76 >seq95628 Length=1400 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || |||| || || |||||| || || ||| ||| || || || |||||||| | Sbjct 234 GCCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 175 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | ||| | || || | |||||| |||||||| || | | ||| ||||||| ||| Sbjct 174 CAACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGG 115 Query 48659 AACGCCCTCCTTGTCGCTAATCTT 48682 || ||||||||||| |||||| Sbjct 114 AATCCCCTCCTTGTCCTGAATCTT 91 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || || ||||| |||| || | | | || ||||||||| Sbjct 437 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGC 378 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| | ||| || |||| || | ||||||||||| |||||| Sbjct 377 TTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGAATCTTA 318 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || ||||||||||| || || || || || ||| Sbjct 317 GCCTTGACATTGTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCTGTC 258 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || |||||||||||||| Sbjct 257 AGTGTCTTGACAAAAATCTGCAT 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380371225904739