Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq99465 156 5e-33 seq31467 154 2e-32 seq85463 136 4e-27 seq110764 95.1 1e-14 seq46960 89.7 6e-13 >seq99465 Length=4513 Score = 156 bits (172), Expect = 5e-33 Identities = 235/332 (71%), Gaps = 9/332 (3%) Strand=Plus/Plus Query 162918 TGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTAT 162977 ||| |||||| |||| | | |||||||| ||| ||||| | ||||||| || || Sbjct 2945 TGTTTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAAT 3004 Query 162978 TTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCC 163037 |||| ||||||| |||| |||| | || ||| | || ||||| || || || ||||| Sbjct 3005 TTCTTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA--- 3061 Query 163038 CTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGG 163097 | |||||| || || || |||||||||| || || || || ||||||||||| || Sbjct 3062 --TTCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGG 3119 Query 163098 TTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGG 163157 ||| | || |||||| | | ||||| |||| || || | || | || | || Sbjct 3120 TTCCTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGG 3179 Query 163158 TTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGG 163217 ||| || ||||| || | | |||| |||| || || || ||||| |||| |||||||| Sbjct 3180 TTACAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGG 3238 Query 163218 TCGCTTGATCT---TCCAGTATGCATCTTTCA 163246 || ||||||| | |||||| |||| ||| Sbjct 3239 CCGATTGATCTATGTGTAGTATGAATCTATCA 3270 >seq31467 Length=18065 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 163051 GGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACT 163110 || || || ||||||||||| || || || || ||||||||||| ||||| | || ||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 163111 TCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGA 163170 ||| | | ||| | ||||| || || | || || || | ||||| | | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 163171 CAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTC 163230 ||||| ||||| ||||| || || || || |||||||| |||||| | || ||||||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 163231 CAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGC 163280 || ||||| |||||||||||| ||||| | |||||||| || ||||| Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGC 5249 >seq85463 Length=6098 Score = 136 bits (150), Expect = 4e-27 Identities = 206/291 (71%), Gaps = 24/291 (8%) Strand=Plus/Plus Query 163203 TCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACT 163262 |||||| |||||||| || ||||||||||| ||||| |||| ||||||| ||||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 163263 TCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTC 163322 |||||| |||| ||||| | ||||| || | || ||||||||||| | || || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGCTA----GGTATC 4134 Query 163323 AAC--TATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGT 163380 | | ||||| ||||| || || |||||||| || ||| ||||||| ||||| | Sbjct 4135 AGCGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGA------T 4188 Query 163381 GGT-AAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGT 163439 || ||||| | | |||| |||||| | ||| | || |||||||| ||||| Sbjct 4189 AGTCAAAGTCA--AAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGT 4246 Query 163440 TATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||| ||||||| || | | | || ||||| ||||||| ||| Sbjct 4247 TATGC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq110764 Length=2751 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 163254 ACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAAT 163313 |||||| | ||||||||||| ||||| | ||||| || | |||||||||||||| | Sbjct 1539 ACGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTT 1598 Query 163314 GGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAAT 163363 ||| | || ||||| |||||||| ||||||||||| |||||||||| Sbjct 1599 AGGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAAT 1648 >seq46960 Length=374 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 162544 TGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCA 162603 ||||||||||| |||||||||||| || | | ||| | || || || ||| | Sbjct 22 TGGTTCGGTGTTTTGATGATCCCTACCTCATTGACCGCAACTTCTGTATTTATTATTACC 81 Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663 |||||||| || |||||||| ||||| |||||||| | |||| |||| | || | || Sbjct 82 TTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACTTGTTTCTGGATATCTA 141 Query 162664 CTCTATGGTAACAACAT 162680 || ||||| |||||||| Sbjct 142 CTTTATGGGAACAACAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552241394074920