Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq115592 140 4e-28 seq85463 105 8e-18 seq110764 100 3e-16 seq31467 93.3 5e-14 seq71912 89.7 6e-13 >seq115592 Length=218 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 165165 GTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAAT 165224 ||||| ||| | ||||| | || ||||||| ||||||||||| | || || |||||| Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 165225 ACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAA 165284 || |||| || ||||| || |||||||| || || ||| | | || || | Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 165285 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCG 165344 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 165345 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 165379 ||||| || || || ||| | ||||| || ||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq85463 Length=6098 Score = 105 bits (116), Expect = 8e-18 Identities = 170/244 (70%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 163597 CATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTT 163656 ||||| ||||| || || ||||||||||||||||| ||| ||||| | | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 163657 CACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGC 163716 |||||| |||| || || |||||||| || || || ||||| |||| || || | ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 163717 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 163776 |||||| ||||| || || |||||||| || ||| | ||| | ||||| |||| || Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 163777 CGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATG 163836 | || | |||| || | | ||||| ||| || ||||| ||||||||| Sbjct 4198 C-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTATG 4250 Query 163837 CATG 163840 |||| Sbjct 4251 CATG 4254 >seq110764 Length=2751 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 163657 CACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGC 163716 ||||||||||| || || |||||||| || || |||||||| ||||| | || | | | Sbjct 1549 CACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAAC 1608 Query 163717 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 163754 |||||||| |||||||| ||||||||||| |||||||| Sbjct 1609 ACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq31467 Length=18065 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 163444 GGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACC 163503 || || |||||||| ||||| || || || ||| || |||||||| | || || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 163504 TCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGT 163563 ||| | || | || || || |||| ||| || || | ||||||| | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 163564 CAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTC 163623 ||||| ||||| || || || ||||| || || ||||| ||||| | || ||||||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 163624 CAATATGCATCATTCAACAAC 163644 |||||||| ||||||||| Sbjct 5298 CAATATGCTAGTTTCAACAAC 5278 >seq71912 Length=2485 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 165444 CGTGCTTACGATTTC-GTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 165502 |||||||| |||||| || |||||| || | || || |||||| || |||||||||| Sbjct 1571 CGTGCTTATGATTTCCGTTTCTCAGGAAATTCGTGCCGCGGAAGATTCAAAATTTGAGAC 1512 Query 165503 CTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGA 165562 || ||||||||||| || ||||| || ||||| | | || |||| || || || Sbjct 1511 TTTTTACACCAAAAATATTCTATTAAACGAAGGTATTCATGTTTGGACAGCGACTCAAGA 1452 Query 165563 TCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 165598 ||| | ||||||| |||| ||| | ||||| || Sbjct 1451 TCAGCATAATGAAAATCTTATATTCTCTGAAGAGGT 1416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562350754640840