Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq115592 140 3e-28 seq71831 138 1e-27 seq99465 136 4e-27 seq31467 136 4e-27 seq85463 102 8e-17 seq110764 93.3 4e-14 seq42107 87.8 2e-12 >seq115592 Length=218 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 10371 GAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAA 10430 ||||||||||| || |||| | || | |||| || || || || | || ||||||| Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 10431 ACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAG 10490 | || | | | ||||||| || ||||| || ||| |||||| | ||||||| Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 10491 AAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTG 10550 ||||| || ||||| ||||| ||||||||||| || |||||||| || ||||| ||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 10551 CTTTTAGCAATAAACGCTGGCTTCATTTCTTTATG 10585 ||||| ||||||||| ||| | |||||||||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 4 >seq71831 Length=3823 Score = 138 bits (152), Expect = 1e-27 Identities = 216/307 (70%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 8671 TTCCTTG-TCTATCCNNTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTC 8729 || |||| | || || |||||||||| || | ||||||||||||||| || || || Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 8730 CGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTT 8789 |||| ||||||| ||| |||| || |||||||||||| ||| || ||| |||| || Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCATT 857 Query 8790 CCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTC 8849 || ||| | | || ||| |||| | || ||| || || || | ||||||||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 8850 ACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTA 8909 | | |||||| || | | | ||||| |||| || ||| || | || || Sbjct 796 CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATA 737 Query 8910 CAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCG 8969 || || ||||||| | |||||||| || || | |||||||||| |||||||| || Sbjct 736 CAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCG 677 Query 8970 CTTGATC 8976 |||||| Sbjct 676 ATTGATC 670 >seq99465 Length=4513 Score = 136 bits (150), Expect = 4e-27 Identities = 216/308 (70%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 8671 TTCCTTG-TCTATCCNNTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTC 8729 || |||| |||| | |||||||||| || |||||||||||||||| || || || Sbjct 2948 TTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTC 3007 Query 8730 CGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTT 8789 |||| ||||||| ||| |||| ||| |||||||||| || || || ||||| | Sbjct 3008 TTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----T 3062 Query 8790 CCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTC 8849 || ||| || || || ||||| |||| ||| || || || || ||||||||||| Sbjct 3063 TCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTC 3122 Query 8850 ACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTA 8909 | || |||||| || | | | ||||| |||| || || || | || || Sbjct 3123 CTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTA 3182 Query 8910 CAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCG 8969 ||| |||||||| | | | ||| |||| || || || || || |||| |||||||| || Sbjct 3183 CAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCG 3241 Query 8970 CTTGATCT 8977 ||||||| Sbjct 3242 ATTGATCT 3249 >seq31467 Length=18065 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 8800 GGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACT 8859 || || |||||||| |||||||| || || || || ||||||||||| | || ||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 8860 TCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGT 8919 ||| || | | || ||||| |||| || ||| || | || |||| | |||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 8920 CAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTC 8979 ||||| || |||||||| || || || ||||||||||| |||||| | || ||||||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 8980 CAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTG 9032 |||||||| ||| ||||| ||| | || || ||||| || ||||| || Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq85463 Length=6098 Score = 102 bits (112), Expect = 8e-17 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 8952 TCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTT 9011 |||||| |||||||| || ||||||||||||||||| ||| |||| ||| | || Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 9012 GCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTC 9071 || ||| |||| ||||| |||||||| ||||| || ||||| || | || || || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 9072 GACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCC 9114 |||||| ||||| || ||||| ||||| || ||| | ||| Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCC 4179 >seq110764 Length=2751 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 9010 TTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTC 9069 || || |||||||| ||||| |||||||| ||||| |||||||| || || | || || Sbjct 1546 TTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATC 1605 Query 9070 TCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCA 9110 ||||||||||||||||| || || ||||| |||||||| Sbjct 1606 AACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq42107 Length=2384 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 8574 TTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGT 8633 |||| |||||||||| ||||| ||| || ||| | || ||||| |||||||| ||| Sbjct 1370 TTATGTGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGT 1429 Query 8634 TGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCC 8684 |||||| || ||||||||||| |||| | | ||||| ||| | |||| || Sbjct 1430 TGCATATTCAGCTCCTGTTGCAGCTGTTACCGCTGTTTTCTTGATCTACCC 1480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515692413192000