Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq69221 91.5 1e-13 seq55416 89.7 4e-13 >seq69221 Length=10640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 || ||||| || | ||| || || ||||| ||||| ||||| || |||||| ||||| Sbjct 5878 GATAAAGAAGGTATCCCCCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAACTGGAA 5937 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| || |||| |||| || |||||||| ||||||||||| || || ||| | || || Sbjct 5938 GATGGTAGAACTTTGGCAGACTATAACATCCAAAAAGAATCAACACTTCACCTTGTTTTG 5997 Query 28767 AGATTACGAGGAGGGATAATAAT 28789 || | | ||||| | ||| || Sbjct 5998 AGGCTTAGGGGAGGAACAATGAT 6020 >seq55416 Length=9261 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | || ||||| ||||| || || ||||| || |||||||||||| Sbjct 4043 GACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAACAATTGGAA 3984 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| || ||| |||| ||||| || || || |||||||| || || ||| | || ||| Sbjct 3983 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTTA 3924 Query 28767 AGATTACGAGGAGG 28780 ||| | | ||||| Sbjct 3923 AGACTTAGGGGAGG 3910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424772312530347