Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq85463 159 4e-34 seq31467 156 5e-33 seq115592 125 8e-24 seq110764 113 5e-20 seq96029 102 9e-17 seq110392 98.7 1e-15 seq78285 96.9 4e-15 seq101204 82.4 8e-11 >seq85463 Length=6098 Score = 159 bits (176), Expect = 4e-34 Identities = 208/287 (72%), Gaps = 18/287 (6%) Strand=Plus/Plus Query 161581 CACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTG 161640 || || ||||| || || |||| |||||||| ||| ||| ||||||| || ||| | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 161641 CACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGC 161700 |||||| |||| |||||||||||||| || || || |||||||||| || || | ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 161701 ACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGT 161760 |||||| ||||| || ||||||||||| || ||| | || | |||||||||| Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTC----- 4192 Query 161761 AAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATG 161820 ||||| | || | |||| || | ||||||||||| ||||| || ||||| ||| Sbjct 4193 AAAGTCA--AAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTATG 4250 Query 161821 CACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 161867 | ||||||| || | | |||| ||||| ||||||| ||| Sbjct 4251 C---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq31467 Length=18065 Score = 156 bits (172), Expect = 5e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 161427 CGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTAC 161486 ||||||||| ||||| || ||||| || || |||||||| ||||| ||||| |||| || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 161487 CTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGG 161546 ||| || | | |||||||| ||||| || || || | ||||||| | ||| Sbjct 5419 TTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 161547 TCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTT 161606 |||||| ||||| || || || ||||| || || || || ||||| | || |||| || Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 161607 CCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTG 161660 |||||| ||| ||||||||||| || ||| | |||||||| || |||||||| Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq115592 Length=218 Score = 125 bits (138), Expect = 8e-24 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 162688 TTGGTGG-TGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAA 162746 |||| || ||| ||||| | ||||||||||| | || || |||||||| | | ||| Sbjct 204 TTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAA 145 Query 162747 GATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTAT 162806 ||||| || ||||| || || || ||| || | || || | |||||||| ||| Sbjct 144 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTAT 85 Query 162807 TCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAG 162866 || ||||| ||||| |||||||| ||||| || || || || |||||||| || || Sbjct 84 TCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAA 25 Query 162867 CGTTGGTTGCATTTCTTTATG 162887 |||||||| |||||||||||| Sbjct 24 CGTTGGTTACATTTCTTTATG 4 >seq110764 Length=2751 Score = 113 bits (124), Expect = 5e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 161632 CGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTG 161691 || ||| | ||||||||||| |||||||||||||| || || |||||||||||||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 161692 GGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCA 161738 || | | ||||||||| |||||||| || |||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq96029 Length=8464 Score = 102 bits (112), Expect = 9e-17 Identities = 203/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 162159 TTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGG 162218 |||| |||||| |||| || | || ||| | ||| ||| ||||| | |||| |||| Sbjct 1615 TTTGGAGGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGGGG-TTGG 1673 Query 162219 CTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTT 162278 | | || || ||||| || || |||||||| || | | || ||||||||| | Sbjct 1674 TTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTG 1733 Query 162279 GAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATT 162336 || || || || ||||||| | | |||||||||| || || | | | | |||| Sbjct 1734 GAAGGCTGTAA--TTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATT 1791 Query 162337 CTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTG 162396 || | || | || ||| ||||||| ||||| || || | | ||||| ||| | | Sbjct 1792 CTTTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGG 1851 Query 162397 GGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATG 162452 |||| || |||||||| || || || || || | || | ||| |||||||||||| Sbjct 1852 GGGGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATG 1907 >seq110392 Length=2942 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | ||| | || |||||||||||| | |||| |||| Sbjct 548 TTTGATATTATGGATGACTGGTTACGAAGGGGCCATTTCGTTTTTGTAGCCTGGCCTGGC 489 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || | ||| ||| ||| ||| | | ||||||||| | || | || || || Sbjct 488 CTATTGCTCTCTCCTTGTGCCTATTTTG-TGTAGGGGGTTGGTTCACAAGTACAACCTTT 430 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCT 162295 || || |||||||| || ||| | |||||||||||| | || || || || ||||| Sbjct 429 GTAACTTCATGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGCTGTAA--TTTCT 372 Query 162296 TA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGG 162354 || | | |||||||||||||| || | | | | |||||| | || | || ||| Sbjct 371 TAACAACCGCAGTTTCTACTCCTGCTAATAGTTTAGTGCATTCTTTATTGTTACTGTGGA 312 Query 162355 GTCCTGA 162361 ||||||| Sbjct 311 GTCCTGA 305 >seq78285 Length=1296 Score = 96.9 bits (106), Expect = 4e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||||||||| | || |||| ||| || |||||||| ||||||||| | || || Sbjct 636 TACATCCTTGACTCGGCAGAGGCAGCTGGAGTCGAACTGCCATACTCGTGCAGGGCTGGA 577 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | ||||| || ||||| || || ||| |||| ||||| |||| || Sbjct 576 GCGTGCTCCACCTGTGCTGGGAAACTGGTGTCGGGCTCCGTGGACCAGTCCGACGGCTCG 517 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 || || ||||| | || || | | || | | | | || || |||||||||| || Sbjct 516 TTTCTTGACGAGAAACAGATGCAGACCGGATACCTGTTAACGTGCATTTCTTATCCGACT 457 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAG-GAACTGTATTGAT 158566 |||||||| ||| | || |||||| |||| || || || |||| Sbjct 456 TCAGATTGTGTCATTCACACACACAAGG-AGAGTGATCTTTACTGAT 411 >seq101204 Length=12639 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||||| ||| | |||||| ||| || ||||||| ||||| ||| | || || Sbjct 3725 TACATCCTCGACTCTGCTGAGTCAGCTGGGCTCGAACTTCCATACTCATGCAGGGCTGGA 3666 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || || ||||| || ||| | || || || | || ||||| ||| ||| Sbjct 3665 GCATGCTCTTCCTGTGCTGGGAAAATGGTGTCGGGGGCTGTCGACCAGTCCGATGGGTCG 3606 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 || || |||||| | || || | || | | | || || || ||||| ||||| || Sbjct 3605 TTTCTCGACGATAAACAGATGCAGGAAGGGTACGTGCTTACATGCGTTTCCTATCCGACT 3546 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAG-GAACTGTA 158561 |||||||||||| | || |||||| |||| || ||||| Sbjct 3545 TCAGATTGTGTGATTCACACACACAAGG-AGAGTGATCTGTA 3505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546911933447880