Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq99465 116 1e-21 seq71831 114 4e-21 seq46960 89.7 2e-13 seq85463 84.2 7e-12 >seq99465 Length=4513 Score = 116 bits (128), Expect = 1e-21 Identities = 201/291 (69%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 18088 AGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGC 18147 |||| | || |||||||| |||| || || || |||||||| | |||| | | || | Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGAC 3191 Query 18148 CAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAG 18207 | ||||| || || | || || ||| || || |||| || || | |||| Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131 Query 18208 TAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGA 18267 | || | || ||||||||| ||||| | || ||||||| || || || || Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071 Query 18268 GCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGA 18327 |||||| | |||||||| ||||| || || || | |||||| | |||||| |||| Sbjct 3070 ACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016 Query 18328 AAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAA 18378 |||||| ||| || |||||||||||||||| ||||| ||||| |||| Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAA 2965 >seq71831 Length=3823 Score = 114 bits (126), Expect = 4e-21 Identities = 205/297 (69%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 18099 CCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATAT 18158 |||||||| |||||||| | | |||||||| || |||| ||||| | |||| | ||| Sbjct 680 CCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACTAAATCTGTAT 739 Query 18159 CCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTT 18218 || | || ||| ||| || || |||| || || | ||||| | | Sbjct 740 CCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGTTGCCAAGGAA 799 Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || |||||| || ||||| | || || |||| | || || | | |||||| || Sbjct 800 CCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAACATATGAAAT 859 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || | |||||| || | ||| || || | ||||| | |||||| |||||||||| | Sbjct 860 GGGTACATAAGAATGT-GTGCTCAGCCTAAAATACAATCATGAAGTTGAAAGTACAAGAA 918 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAA 18394 || || ||||||||||||||| | ||||| ||||| |||| || |||| | ||||| Sbjct 919 ATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAA 975 >seq46960 Length=374 Score = 89.7 bits (98), Expect = 2e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 18636 ATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACG 18695 |||||||| ||||| |||| ||| || ||| | |||||||||||||| || || || Sbjct 158 ATGTTGTTCCCATAAAGTAGATATCCAGAAACAAGTTCACGAATACCATCAATATCTACT 99 Query 18696 GGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATC 18755 ||||||||||||| || | ||| | |||| | | || |||||| || | ||||||| Sbjct 98 GGAGGAGCAGCAATGAAGGTAATAATAAATACAGAAGTTGCGGTCAATGAGGTAGGGATC 39 Query 18756 ATAAGTACCCCAAACCA 18772 || | || || ||||| Sbjct 38 ATCAAAACACCGAACCA 22 >seq85463 Length=6098 Score = 84.2 bits (92), Expect = 7e-12 Identities = 190/281 (68%), Gaps = 20/281 (7%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| | | | |||||||||| |||||||||| | |||||||| Sbjct 4280 AGCTAGGTCTAGAGAGCATTTATGAGCAT---------GCATAACTTCTATACCAAGGTT 4230 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||||| | ||| |||| | | ||||| || | | |||| ||| Sbjct 4229 AGCACGGTTGATGATATCAACCCACG--ACTTTGACTTTGACT--ATCAACTAC---GGA 4177 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 || ||| || ||||| ||||| ||||| || ||||| | ||| || ||| || | Sbjct 4176 TTTGTTAAAATTGAAACCATTTAGATTGAAGGCCATGACGCTGATACC--TAGCAGTGAA 4119 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-TTGTTAA 18072 ||| || | || ||||||||||| | || ||| |||| || | | |||| | Sbjct 4118 CCAAATACCCACTACAGGCCAAGCAGCTAGGACGAAGTGTA-ACGAACGAGAGTTGTGGA 4060 Query 18073 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGA 18113 | |||||||| |||||||| | || |||||||| |||||| Sbjct 4059 AACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATGA 4019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151099190046342