Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq31467 154 2e-32 seq99465 149 8e-31 seq71831 143 3e-29 seq115592 118 1e-21 seq96029 87.8 2e-12 seq110764 86.0 8e-12 seq42107 86.0 8e-12 >seq31467 Length=18065 Score = 154 bits (170), Expect = 2e-32 Identities = 162/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 ||||||||||| || |||||||||||||| || | ||||||||||||||||||||| Sbjct 5276 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGTCTAAAGTAACCATGAGCGGCTACG 5335 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522 || || || || ||||||||||| ||| | ||||||| | || ||||||| |||| Sbjct 5336 ATATTATAAGTTTCTTCCTCTTGACCGGATCTGTAACCTTCATTAGCAGATTCATTTTCT 5395 Query 103523 GTCGTCT-CACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGA 103581 || || | | ||| | | | || | || |||| ||||| |||||||||||||| || || Sbjct 5396 GTGGTTTCCCCGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTGAATAGGGA 5454 Query 103582 ACCACCGAAGACTCCAGCAACGCC-CAGC 103609 || ||||| || ||||| ||||| |||| Sbjct 5455 GCCGCCGAATACACCAGCTACGCCGCAGC 5483 >seq99465 Length=4513 Score = 149 bits (164), Expect = 8e-31 Identities = 222/311 (71%), Gaps = 8/311 (3%) Strand=Plus/Minus Query 103428 AGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTC 103487 ||||||| || || |||||||||| || |||||||| || || | |||| | || | | Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTTTCCCT-GAC 3191 Query 103488 CGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGAC 103546 |||| |||||||| | || || |||| |||| || || | | || | | | || | Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131 Query 103547 GTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCC 103606 || |||| ||||| |||||||||||||| || || || |||| || || || ||||| Sbjct 3130 TTACCAAG-GAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCT 3072 Query 103607 AGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTG 103666 ||| || | ||||| ||||| ||||| || || | ||| || | |||| ||||| Sbjct 3071 CACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTG 3017 Query 103667 AAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAG 103726 || || | ||||| || ||||||| |||| || || |||||||||| ||||| Sbjct 3016 AAAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAATTTGGTAG 2957 Query 103727 ACCAAGAATAC 103737 | |||||| || Sbjct 2956 ATCAAGAAAAC 2946 >seq71831 Length=3823 Score = 143 bits (158), Expect = 3e-29 Identities = 220/310 (71%), Gaps = 3/310 (1%) Strand=Plus/Plus Query 103429 GATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCC 103488 |||||| || || |||||||||||||||| | |||| || || || |||| |||||| | Sbjct 670 GATCAATCGGCCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACT 729 Query 103489 GAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT-CACGAACCAGCGAGGACG 103547 || |||| || | || ||||||| |||| || || | | || | | | || | Sbjct 730 AAATCTGTATCCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGT 789 Query 103548 TAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCA 103607 | |||| ||||| |||||| ||||||| || || || || | || | ||| |||| | Sbjct 790 TGCCAAG-GAACCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTA 848 Query 103608 GCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGA 103667 ||| || || |||| ||| |||||| | || || || | || || | |||| |||||| Sbjct 849 ACATATGAAATGGGTACATAAGAATG-TGTGCTCAGCCTAAAATACAATCATGAAGTTGA 907 Query 103668 AGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGA 103727 | || | ||||| || | ||||||| |||| | || |||||||||| ||||| | Sbjct 908 AAGTACAAGAAATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTAAA 967 Query 103728 CCAAGAATAC 103737 |||||| || Sbjct 968 TCAAGAAAAC 977 >seq115592 Length=218 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 101952 CATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAGAA 102011 |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| || Sbjct 4 CATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAAAA 63 Query 102012 ACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAA 102071 ||||| || || ||||| |||||||| ||||| |||| || | | || || ||| Sbjct 64 GCGGTTAGCAGTGACCATGGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGGAA 123 Query 102072 AGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGC 102131 || ||||| ||||||||||||| | | ||| || || || || |||| || || || Sbjct 124 TGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATAGC 183 Query 102132 TGACAGCAGTGCTCCTCCCAGGATACCTGCAAC 102164 | |||| || | |||| | ||| ||||| Sbjct 184 GCATAGCAAAGCAGCCCCCAATACACCAGCAAC 216 >seq96029 Length=8464 Score = 87.8 bits (96), Expect = 2e-12 Identities = 203/305 (67%), Gaps = 1/305 (0%) Strand=Plus/Minus Query 102376 AATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAG 102435 |||||| | | ||||||||| || || | || | || || ||||| || |||| ||| Sbjct 1918 AATTGATGTAACATGAAACCTATTAGTCCGAAAGTGCCATGCAGAGCAACCAAAGTCCAC 1859 Query 102436 AGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAGA 102495 || ||||| | ||| ||| | ||||||||||| ||||||||| ||| |||| Sbjct 1858 AGACCCCCCAATTGACACCAACAAGTAAAATCTCCTTGTACTTCAGGACTCCACAGTAAC 1799 Query 102496 AGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAATTAGCA 102555 | | |||||| | | | | |||| | | || || |||| ||| | ||||||| Sbjct 1798 AATAAAGAATGCGCTAAACTATTAGCAAGACTAGAAACTGCAGTTGTTAAGAAATTACAG 1739 Query 102556 CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCA 102615 ||||| | || | || | ||||||||||| ||||| |||| || || || Sbjct 1738 CCTTCCAAATAGGAACTTGCTAATTTATGGGTATACCATGAAGTTACAAAAGTTGTACCT 1679 Query 102616 GTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCC 102675 | | ||| |||| || || | ||| ||| | ||| || | ||| |||| ||| || Sbjct 1678 GCGAACCA-ACCCCTATAGCAAAATAGGCACAAGTAAAGAGTAATAGGCCAGTCCAGCCT 1620 Query 102676 ACAAA 102680 |||| Sbjct 1619 CCAAA 1615 >seq110764 Length=2751 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 103295 TGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAAC 103354 |||||||| ||||| ||||| |||||||| ||||||||| | | ||| | || |||||| Sbjct 1646 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATGGTGTTGATACCTAAAGCAGTGAAC 1587 Query 103355 CAGATACCCACTACTGG 103371 |||||||||||||| || Sbjct 1586 CAGATACCCACTACAGG 1570 >seq42107 Length=2384 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 103721 GGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATC 103780 ||||||| |||||| || |||| |||| ||||||||||| || ||||| ||| ||| Sbjct 1480 GGGTAGATCAAGAAAACAGCGGTAACAGCTGCAACAGGAGCTGAATATGCAACAGCAATC 1421 Query 103781 CAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATA 103830 || |||||||| |||| |||| | | ||||||||||| |||| ||| Sbjct 1420 CAAGGGCGCATACCCAAACGGAAACTAAGCTCCCACTCACGACCCACATA 1371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632547547192440