Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq85463 100 8e-17 seq31467 96.9 1e-15 seq99465 89.7 2e-13 >seq85463 Length=6098 Score = 100 bits (110), Expect = 8e-17 Identities = 174/248 (70%), Gaps = 15/248 (6%) Strand=Plus/Minus Query 21505 CATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCA 21564 ||||||| || || | |||||||| |||||||| | || ||| |||| | || | | Sbjct 4254 CATGCATAACTTCTATACCAAGGTTAGCACGGTTGATGATATCAACCCACGACTT--TGA 4197 Query 21565 CCT-GTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCC 21623 | | | | |||| | | |||| |||||| ||||||||||| | ||||| ||| Sbjct 4196 CTTTGACTATCAACTACG------GATTTGTTAAAATTGAAACCATTTAGATTGAAGGCC 4143 Query 21624 ATG--GTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAA 21681 ||| | || || | ||| || ||||||||||| || |||||||| ||||| || | Sbjct 4142 ATGACGCTGATAC--CTAGC--AGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGA 4087 Query 21682 AGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAAT 21741 ||| || | ||| || || | || ||||||||||||||||| | || ||||| | Sbjct 4086 CGAAGTGTAACGAACGAGAGTTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGT 4027 Query 21742 AGCCGTGA 21749 | || ||| Sbjct 4026 AACCATGA 4019 >seq31467 Length=18065 Score = 96.9 bits (106), Expect = 1e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 21669 CAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATA 21728 || ||||| |||||||| || | ||| || || || || ||||||||||||||||| Sbjct 5246 CAAGCAGCTAGAAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATC 5305 Query 21729 AGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAAC 21788 | || | ||| || || ||||| || || ||||| ||||| |||||||||||||| | Sbjct 5306 AATCGTCTAAAGTAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGGAT 5365 Query 21789 TTGTAACC 21796 ||||||| Sbjct 5366 CTGTAACC 5373 >seq99465 Length=4513 Score = 89.7 bits (98), Expect = 2e-13 Identities = 195/291 (67%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 21724 AGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGAC 21783 |||| | || ||||| || || | ||||| || ||||| |||| |||| | || ||| Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTTTCCCT-GAC 3191 Query 21784 CAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACG 21843 | || |||||||| | || | | | ||| || || | | || | || | Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131 Query 21844 TGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCA 21903 | |||| | ||| ||||||||| ||| | || | ||||| || || || || Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071 Query 21904 GCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGA 21963 ||| |||| |||||||||||||| |||||||||| ||| || | |||| |||||| Sbjct 3070 ACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016 Query 21964 AGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAA 22014 | || | || || || |||||| ||||||||||| || || |||| Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAA 2965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145996193313540