Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq103549 98.7 5e-16 seq21024 93.3 2e-14 >seq103549 Length=14649 Score = 98.7 bits (108), Expect = 5e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 |||||| ||||| || ||||| || || || |||| ||||| |||||||||||| | Sbjct 7899 ACCTTTCCTTTTGCCCCCACCCTGGTCAACATATCGAGCAGTGTCATTGAAAACTCGAAG 7840 Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCT 26184 ||||||||| | ||| |||| ||||| ||||| | | | || | |||||| | | Sbjct 7839 CATTGGAACAACGCCATTTGACAATCCATTTGTTCCACGTATATAACTTCCTGTAGCACG 7780 Query 26185 AATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGA 26244 ||||| || | | ||| || || ||||| |||| |||| | ||||| || Sbjct 7779 AATATTATGGACGGACACACCAATCCCTCCAGCTGATTTACTAATAACAGCACATTCCTT 7720 Query 26245 AACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACA 26298 || |||||| | || || | || |||||| | ||||| | || || ||||| Sbjct 7719 AAGTGTATCATATATGCCCTCAATACTATCATCCTTCATGCATATCAAGAAACA 7666 >seq21024 Length=7623 Score = 93.3 bits (102), Expect = 2e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 |||||| || || || || || || || || |||| ||||| |||||||||||| | Sbjct 3183 ACCTTTCCTCTTGCCCCCGCCCTGGTCCACATATCGAGCAGTGTCATTGAAAACTCGAAG 3124 Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCT 26184 ||||||||| | ||| |||| ||||| ||||| | | | || | |||||| | | Sbjct 3123 CATTGGAACAATGCCATTTGATAATCCATTTGTTCCACGTATATAACTTCCTGTGGCACG 3064 Query 26185 AATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGA 26244 |||| ||| || | ||| || || ||||| |||| ||| | ||||| || Sbjct 3063 GATATTATGAACAGACACACCAATACCTCCAGCTGATTTGCTAATTACAGCACATTCCTT 3004 Query 26245 AACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACA 26298 || ||||||| | || || | || |||||| | ||||| | || || ||||| Sbjct 3003 AAGTGTATCGTATATGCCCTCAATACTATCATCCTTCATGCATATCAAGAAACA 2950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252663782737475