Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq99465 138 1e-27 seq85463 118 1e-21 seq31467 107 2e-18 seq71831 105 8e-18 seq102078 100 3e-16 seq96029 98.7 1e-15 seq109952 95.1 1e-14 seq110392 86.0 7e-12 >seq99465 Length=4513 Score = 138 bits (152), Expect = 1e-27 Identities = 218/311 (70%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 124302 AGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTC 124361 |||| | || ||||||||||| | ||| ||||| || || || | ||||| | | || | Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGAC 3191 Query 124362 CGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATG 124421 |||| || ||||| | || | || | ||||| |||| ||||| | | ||| | Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131 Query 124422 TAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTG 124481 | || | ||||||||||| || ||||| || || |||| | || ||||| ||| Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071 Query 124482 CCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGA 124541 ||| || | ||||| ||||| |||||||| || | ||| || | ||| ||||||| Sbjct 3070 ACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016 Query 124542 AAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATA 124601 |||||| || || || | |||||||||||||| || || ||||||| | |||| | Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAATTTGGTAGA 2956 Query 124602 CTAAGAATACA 124612 ||||| ||| Sbjct 2955 TCAAGAAAACA 2945 >seq85463 Length=6098 Score = 118 bits (130), Expect = 1e-21 Identities = 199/288 (69%), Gaps = 20/288 (7%) Strand=Plus/Minus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| ||| ||||||||||| | | | || || | ||||||||||||| ||| Sbjct 4288 TCAACAGCAGCTAGGTCTAGAGAGCATTTATGAG---------CATGCATAACTTCTATA 4238 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTT-AGCATC 124158 || | ||| || | ||| | | |||| ||| |||| ||| | || | ||| Sbjct 4237 CCAAGGTTAGCACGGTTGATGATATCAACCC--------ACGACTTTGACTTTGACTATC 4186 Query 124159 AACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCAT 124218 ||| || |||| |||||| ||||||||||| | ||||| ||||| || |||||| | Sbjct 4185 AACTACGGATTTGTTAAAATTGAAACCATTTAGATTGAAGGCCATGACGCTGATACC--T 4128 Query 124219 AGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGA 124278 || || ||||| | || || ||||| || | ||||||| |||||| | | || Sbjct 4127 AGCAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACGAAGTGTAACGAACGAGA 4068 Query 124279 GTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTG 124326 ||||| ||| |||||| |||||||| | || ||||||||||| || Sbjct 4067 GTTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATG 4020 >seq31467 Length=18065 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124253 GCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGA 124312 ||||| |||||||| | | ||||||||||| |||||| |||||||| | || Sbjct 5252 GCTAGAAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGT 5311 Query 124313 CCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAA 124372 | ||||||||| || || ||||| || || || |||||||| ||||| ||| | | ||| Sbjct 5312 CTAAAGTAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGGATCTGTAA 5371 Query 124373 CCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAA 124432 || | || || || | ||||| ||||| | ||| | | ||| || || | ||| Sbjct 5372 CCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCCGATCAAACTAGAAGTTACCAAGGAA 5431 Query 124433 CCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCC 124479 |||||||| || ||||| || || ||||| | || ||||| || Sbjct 5432 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCC 5478 >seq71831 Length=3823 Score = 105 bits (116), Expect = 8e-18 Identities = 206/303 (68%), Gaps = 1/303 (0%) Strand=Plus/Plus Query 124310 CGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTA 124369 || ||||||||||| || || | | | || || || ||||||| ||||| | || | Sbjct 677 CGGCCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACTAAATCTG 736 Query 124370 TAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGA 124429 || || | || || || | ||||| |||| ||||| | | ||| || | | Sbjct 737 TATCCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGTTGCCAAG 796 Query 124430 GAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGG 124489 ||||||||||| | ||||| || || || | | | ||||| | | ||| || Sbjct 797 GAACCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAACATATGA 856 Query 124490 AAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCT 124549 || || | ||| ||||||| ||||| || | || || | ||| ||||||||||||| Sbjct 857 AATGGGTACATAAGAATGTG-TGCTCAGCCTAAAATACAATCATGAAGTTGAAAGTACAA 915 Query 124550 GAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAAT 124609 || || || || |||||||||||| | || || ||||||| |||||| | ||||| Sbjct 916 GAAATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAA 975 Query 124610 ACA 124612 ||| Sbjct 976 ACA 978 >seq102078 Length=5739 Score = 100 bits (110), Expect = 3e-16 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| || ||||| || || || | |||||||||||| || || || Sbjct 5530 TGAGCCGTGCAAATGTTGCTCGTTGCCTTATCCCTACGAATATGCTGCTCCCTTGTCTGC 5589 Query 139377 AGTGCTAATCTGTATGCAGGATTGCC-TTCG-CTGTCCACTGACTGACCTACAATTCTGC 139434 | ||| | | ||||| || || | || | |||| || ||| | ||| || | Sbjct 5590 ATTGCCATACGCAGAGCAGGCTTCCCATACGAATCAACACTCAC--ACCAATAATCCTCC 5647 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 | || ||| | |||||||||| | | ||||| ||||| || |||||||| ||||| | Sbjct 5648 CCGGCATCATCCTCTTATACTCCTGCGAAGTTGCCAAGAACGCCGCATGAGGCCCTCCAT 5707 Query 139495 ATCCCATAGGAATACCAAACCTTTGC 139520 ||||||| || | ||||||||| ||| Sbjct 5708 ATCCCATCGGCACACCAAACCTCTGC 5733 >seq96029 Length=8464 Score = 98.7 bits (108), Expect = 1e-15 Identities = 196/289 (68%), Gaps = 1/289 (0%) Strand=Plus/Minus Query 123568 CATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAG 123627 |||||||||||| ||||| || ||||| | || || || |||| ||||| || | Sbjct 1907 CATGAAACCTATTAGTCCGAAAGTGCCATGCAGAGCAACCAAAGTCCACAGACCCCCCAA 1848 Query 123628 TTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATG 123687 ||| |||||| | || ||||||| ||||||| | ||| || |||| | | ||| Sbjct 1847 TTGACACCAACAAGTAAAATCTCCTTGTACTTCAGGACTCCACAGTAACAATAAAGAATG 1788 Query 123688 ACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATA 123747 | | | | || | | || ||||| | ||||||||| || || || | ||| Sbjct 1787 CGCTAAACTATTAGCAAGACTAGAAACTGCAGTTGTTAAGAAATTACAGCCTTCCAAATA 1728 Query 123748 TGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACC 123807 ||| ||| | ||| ||||||||||| || || || || || ||| ||||||||| Sbjct 1727 GGAACTTGCTAATTTATGGGTATACCATGAAGTTACAAAAGTTGTACCTGCGAACCAACC 1668 Query 123808 ACCGATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCT 123856 || || | | ||| ||||||| | ||||| || |||| ||| ||| Sbjct 1667 -CCTATAGCAAAATAGGCACAAGTAAAGAGTAATAGGCCAGTCCAGCCT 1620 >seq109952 Length=4426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || || ||| | || || | | || ||||| | || || || || Sbjct 160 CATGGCCTCGGCCGCAGCTGTTCCCTCGTCGAGCAACGAAGCGTTCGACATGGG-AAGCC 218 Query 139919 TG-TAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATA 139977 || | || |||||||| | ||||||||||| | |||| ||| | || ||||| || | Sbjct 219 TGGTTAGATCTGTGATCATGGTTTGGTAATTCAGCAAAGATTCAAGCCTGCCCTGTGAGA 278 Query 139978 TCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||| ||||| || || ||||| ||||||||||| ||||||||| Sbjct 279 TCTCTGCTTGGTAAGGTGTGTACTGTGTGTACCAACCAGGATTCTC 324 >seq110392 Length=2942 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 123702 CAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATAC 123761 |||| || || ||||| | ||||||||| || || || | ||| ||| || | | Sbjct 348 CAGGAGTAGAAACTGCGGTTGTTAAGAAATTACAGCCTTCCAAATAGGAACTCGCCAATC 407 Query 123762 CATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGAT 123821 |||| ||||||||||| || || ||||| || | | ||||||||| || | | | || Sbjct 408 CATGGGTATACCATGAAGTTACAAAGGTTGTACTTGTGAACCAACCCCCTACACA-AAAT 466 Query 123822 ACGCACAAGGCAGA-AGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTT 123880 | |||||||| ||| || || || |||| ||| ||| || || ||| | | || | Sbjct 467 AGGCACAAGG-AGAGAGCAATAGGCCAGGCCAGGCTACAAAAACGAAATGGCCCCTTCGT 525 Query 123881 AACCAGTCGTCAAGAACATCAAA 123903 |||||||| || | || |||||| Sbjct 526 AACCAGTCATCCATAATATCAAA 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578115478102360