Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq31467 138 2e-27 seq115592 134 2e-26 seq85463 123 3e-23 seq110764 105 9e-18 seq100051 84.2 3e-11 seq46960 84.2 3e-11 >seq31467 Length=18065 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26932 CATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATC 26991 || ||||| || |||||||| || ||||| ||||||||||| |||||||||||||||| Sbjct 5246 CAAGCAGCTAGAAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATC 5305 Query 26992 AAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAAC 27051 || || | ||||| ||||| || || ||||| || || || ||||| ||||||||| | Sbjct 5306 AATCGTCTAAAGTAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGGAT 5365 Query 27052 TTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACC 27111 | ||||| | || || ||| |||| || || || | || | ||| || ||| Sbjct 5366 CTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCCGATCAAACTAGAAGTTACC 5425 Query 27112 AGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCG 27165 | || ||||||||| ||| || || || |||||||| ||||| || ||| Sbjct 5426 AAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCG 5479 >seq115592 Length=218 Score = 134 bits (148), Expect = 2e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 23631 AACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAA 23690 ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| |||||| Sbjct 2 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 61 Query 23691 AAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTA 23750 || || || || || ||||| ||||| || || || | ||||| | | || || Sbjct 62 AAGCGGTTAGCAGTGACCATGGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 121 Query 23751 AAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATA 23810 || || ||||| || ||||||||| | | ||||| || || ||| | ||||||||| Sbjct 122 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATA 181 Query 23811 GCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTC 23847 || | || | || | |||| || ||||||||||| Sbjct 182 GCGCATAGCAAAGCAGCCCCCAATACACCAGCAACTC 218 >seq85463 Length=6098 Score = 123 bits (136), Expect = 3e-23 Identities = 133/173 (77%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 26841 ATCAATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCAT--CGTGGATACA 26898 ||||| || || | || || |||||||| || |||||||| ||||| || ||||| Sbjct 4188 ATCAACTACGGATTTGTTAAAATTGAAACCATTTAGATTGAAGGCCATGACGCTGATAC- 4130 Query 26899 CCAAGTGCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAA 26958 | || | |||||||| || || || || ||||| ||||| |||| |||||| || ||| Sbjct 4129 -CTAG--CAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACGAAGTGTAACGAA 4073 Query 26959 CGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATG 27011 || ||||||| ||| |||||||||||||||||| || || ||||| ||||| Sbjct 4072 CGAGAGTTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATG 4020 >seq110764 Length=2751 Score = 105 bits (116), Expect = 9e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 26846 TCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTG 26905 ||||| | || ||||| ||||||||||| || ||||||||||| ||| | ||| | | Sbjct 1654 TCACAAATTGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATGGTGTTGATACCTAAAG 1595 Query 26906 CGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGT 26961 | ||||||||||| || || || ||||| ||||| ||||||||||| || |||||| Sbjct 1594 CAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGT 1539 >seq100051 Length=9184 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 26908 GTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTG 26967 ||||||||||| || | || ||||| |||| ||||||||||| || ||||| || ||| Sbjct 2408 GTGAACCAGATACCCATTACAGGCCAAGCAGTTAGGAAGAAGTGTAACGAACGAGAATTG 2467 Query 26968 TTGAATGAAGCATATTGGAAGATCAA 26993 ||||| |||||||| ||||||||| Sbjct 2468 TTGAAACTAGCATATTAGAAGATCAA 2493 >seq46960 Length=374 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 27535 ATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACG 27594 |||||||| ||||| | || | |||| ||| ||||||||||||| |||||||| || Sbjct 158 ATGTTGTTCCCATAAAGTAGATATCCAGAAACAAGTTCACGAATACCATCAATATCTACT 99 Query 27595 GGTGGTGCTGCGATGAATGCGACAATGAAG-CAGACAGTTGCTGCTAACAGTGTTGGGAT 27653 || || || || ||||| | | ||| || |||| |||||| | || || ||||| Sbjct 98 GGAGGAGCAGCAATGAAGGTAATAATAAATACAGA-AGTTGCGGTCAATGAGGTAGGGAT 40 Query 27654 CATCAGTACACCGAACCA 27671 ||||| ||||||||||| Sbjct 39 CATCAAAACACCGAACCA 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664479579270760