Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq50788 109 7e-19 seq103549 95.1 1e-14 >seq50788 Length=838 Score = 109 bits (120), Expect = 7e-19 Identities = 229/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || |||||||| || ||| ||| || || |||||| || ||| |||||| Sbjct 817 CCCGGTACTGGGAAGACCCTGCTAGCCAAAGCGATTGCTGGTGAAGCAGGTGTTCCATTC 758 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 || || | || | | | ||||| |||||||||||||| || |||||| | | | Sbjct 757 TTCTCCATT--TCAGGTTCGGAGTTTGTTGAGATGTTTGTTGGAGTTGGTGCCTCACGAG 700 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | || || || || | | ||| |||||| || || ||||| || ||||||||| Sbjct 699 TCCGTGACCTTTTCAAGAAAGCCAAGGAAAATGCTCCCTGCATTGTGTTTGTTGATGAGA 640 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 |||||||||| || ||| | | | || | | || || ||| || || || || Sbjct 639 TTGATGCGGTTGGGCGTCAAAGAGGAACCGGAATCG-GTG-GAGGAAACGATGAAAGGGA 582 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGT 175610 || || | || || || | || || |||||||||||||| | |||||||| | Sbjct 581 GCAGACCTTGAACCAGCTCTTGACAGAAATGGATGGCTTTGAAGGAAATACTGGCATAAT 522 Query 175611 GGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 ||| |||| || ||||| || | ||||| || || Sbjct 521 TGTTGTTGCAGCGACTAACCGTGCAGATATTCTCGA 486 >seq103549 Length=14649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 76126 GATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGC 76185 ||||||||| | ||| || ||| | | ||||| ||||||||||| ||||| ||||| Sbjct 9094 GATTGTTACTACAAACCTTAACAAAATAATTGATGTCAATTTTTATCCTGTTGAAACTGC 9153 Query 76186 GCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGT 76245 || |||||||||||| || ||||| || || | ||||| ||||||||||| || Sbjct 9154 AAAAAGGTCTAATATGCGTCATAGACCAATAGGAATTGGTGTACAAGGTCTCGCTGACAC 9213 Query 76246 ATTTATTTTGTGCCGCTACGCATTTGATTC 76275 ||||| ||| || ||||||||||| Sbjct 9214 CTTTATCTTGCTAGGCATGGCATTTGATTC 9243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595659883559840