Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq99465 181 1e-40 seq71831 161 1e-34 seq31467 127 3e-24 seq85463 93.3 5e-14 >seq99465 Length=4513 Score = 181 bits (200), Expect = 1e-40 Identities = 227/310 (73%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 8144 AGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGAC 8203 |||| |||| |||||||| |||| ||||| || |||||||| | |||| | | |||| Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGAC 3191 Query 8204 CAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATG 8263 | || || ||||| | || || || | ||| || || | ||||| | | ||| | Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131 Query 8264 TAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTG 8323 | || || ||||| |||||||||||||| || || || |||| | ||| ||||| ||| Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071 Query 8324 CCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAA 8383 |||||| | ||||||||||| |||||||| || | |||||| | ||||||||| | Sbjct 3070 ACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016 Query 8384 ACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATA 8443 | |||| |||||| ||| ||||||| |||||||| || || ||||||| | | || | Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAATTTGGTAGA 2956 Query 8444 CTAAGAACAC 8453 ||||| || Sbjct 2955 TCAAGAAAAC 2946 >seq71831 Length=3823 Score = 161 bits (178), Expect = 1e-34 Identities = 222/309 (72%), Gaps = 1/309 (0%) Strand=Plus/Plus Query 8145 GATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACC 8204 ||| |||| |||||||| |||||||| | | |||||||| || |||| ||||||| Sbjct 670 GATCAATCGGCCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACT 729 Query 8205 AAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGT 8264 ||| | || || | || ||| || | ||| || || | ||||| | | ||| || Sbjct 730 AAATCTGTATCCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGT 789 Query 8265 AACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGC 8324 | || ||||| |||||| ||||||| || || || || | | || ||||| | | Sbjct 790 TGCCAAGGAACCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAA 849 Query 8325 CATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAA 8384 |||||| || || | |||||||||| | ||||| || | ||||| | ||||||||| || Sbjct 850 CATATGAAATGGGTACATAAGAATG-TGTGCTCAGCCTAAAATACAATCATGAAGTTGAA 908 Query 8385 CGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATAC 8444 |||| |||||| ||||||||||| |||||| | || || ||||||| ||| || | Sbjct 909 AGTACAAGAAATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTAAAT 968 Query 8445 TAAGAACAC 8453 ||||| || Sbjct 969 CAAGAAAAC 977 >seq31467 Length=18065 Score = 127 bits (140), Expect = 3e-24 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| |||||||| |||| | |||||| |||||||| || || | Sbjct 5278 GTTGTTGAAACTA-GCATATTGGAAGATCAATCGTCTAAAGTAACCATGAGCGGCTACGA 5336 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 ||||||| || ||||| |||||||| | | ||||| | || ||| || | ||| | Sbjct 5337 TATTATAAGTTTCTTCCTCTTGACCGGATCTGTAACCTTCATTAGCAGATTCATTTTCTG 5396 Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 | || || | ||| | | ||| || || || ||||| |||||||||||||| || || | Sbjct 5397 TGGTTTCCCCGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGC 5456 Query 8300 CACCGAACATACCTGCTACCCC 8321 | ||||| | ||| ||||| || Sbjct 5457 CGCCGAATACACCAGCTACGCC 5478 >seq85463 Length=6098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 171/247 (69%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 7925 CATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGA 7984 ||||||||||||| ||||| | ||| || | ||| | | ||| ||| | || Sbjct 4254 CATGCATAACTTCTATACCAAGGTTAGCACGGTTGATGATATCAACCC--------ACGA 4203 Query 7985 TTTTACCATTAAC-ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCC 8043 ||| | || || |||||| || |||| |||||| || || || || || || || ||| Sbjct 4202 CTTTGACTTTGACTATCAACTACGGATTTGTTAAAATTGAAACCATTTAGATTGAAGGCC 4143 Query 8044 ATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAG 8103 || || ||||| ||| ||| ||||||| || || || || | | ||| |||| | Sbjct 4142 ATGACGCTGATACC--TAGCAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACG 4085 Query 8104 AAGTGAAGACTTCTACTGTTGT-TAAACGATGCATACTGGAAGATTAATCTACCAAAGTA 8162 ||||| | | | ||||| |||| | ||||| |||||||| |||| |||||||| Sbjct 4084 AAGTGTAACGAACGAGAGTTGTGGAAACTA-GCATATTGGAAGATCAATCGGCCAAAGTA 4026 Query 8163 TCCATGA 8169 |||||| Sbjct 4025 ACCATGA 4019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614923263727960