Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq31467 156 5e-33 seq99465 143 3e-29 seq85463 140 4e-28 seq115592 138 1e-27 seq71831 129 7e-25 seq110764 104 3e-17 seq61876 89.7 6e-13 seq52475 89.7 6e-13 seq71300 84.2 2e-11 >seq31467 Length=18065 Score = 156 bits (172), Expect = 5e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 166320 CGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTAC 166379 |||||| ||||| ||||| || ||| | || ||||||||||| || ||||| || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 166380 TTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGG 166439 |||| | | | | || || || |||| ||||| || | ||||||| | ||| Sbjct 5419 TTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 166440 ACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTT 166499 ||||| |||||||| || || ||||||||||||||||||||||| | || |||||||| Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 166500 CCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATG 166553 |||||| ||| ||||||||||| || || || |||||||| || ||||| || Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq99465 Length=4513 Score = 143 bits (158), Expect = 3e-29 Identities = 206/289 (71%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 166210 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 166269 |||||||| ||||| ||||||| ||||| | ||||| || | || ||||||| |||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 166270 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 166329 | || ||| | |||||||| |||||||| |||||| | ||||| ||||| || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCATTC-----ATATGTGAGGCGTAGCG 3081 Query 166330 GGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTC 166389 || ||||| | ||| | || ||||||||||| || ||||| |||||| | | Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 3141 Query 166390 GTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAA 166449 | || | || || |||| ||| | || | |||||||| ||||| || | | || Sbjct 3142 ATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-AA 3200 Query 166450 GAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCT 166498 ||| | || || |||||||| || |||||||||| || || ||||||| Sbjct 3201 GAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq85463 Length=6098 Score = 140 bits (154), Expect = 4e-28 Identities = 178/245 (73%), Gaps = 9/245 (4%) Strand=Plus/Plus Query 166473 TCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTT 166532 |||||||||||| || || |||||||||||||| ||| ||| ||||||| || || || Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 166533 GCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTC 166592 |||||| |||| ||||| |||||||| || || || |||||||| | || || || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 166593 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 166652 | ||||| ||||| || || |||||||| || ||| | ||| | ||||| |||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 166653 TCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTAT 166712 || || | |||| ||| | | ||||| ||| || ||||| |||||||| Sbjct 4197 TC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 166713 GCATG 166717 ||||| Sbjct 4250 GCATG 4254 >seq115592 Length=218 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 167572 GTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAAT 167631 || || ||| | |||| | ||| ||||| | || || ||||||| ||| ||||| ||| Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 167632 ACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAA 167691 ||||| | |||||||||||| ||||| || || || || | | ||||| | Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 167692 GAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCT 167751 ||||| |||||||| ||||| || || ||||| || ||||| || ||||| || ||||| Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 167752 TTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTA 167787 || ||| ||||| ||| | ||||||||||||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTA 1 >seq71831 Length=3823 Score = 129 bits (142), Expect = 7e-25 Identities = 202/288 (70%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 166210 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 166269 |||||||| ||||| | ||||| ||||| || ||||| || | || ||||||| |||| Sbjct 956 GGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTCTTGTACTTTCAACTTCATG 897 Query 166270 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 166329 | || || | |||||||||| ||||| ||| | || || |||||| | |||| ||| Sbjct 896 ATTGTATTTTAGGCTGAGCACAC-ATTCTTATGTACCCATTTCATATGTTAAGCGTAGCT 838 Query 166330 GGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTC 166389 | |||| | ||| | || |||| |||||| || |||| |||||| | | Sbjct 837 AGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGCAACTTCTAGTTTG 778 Query 166390 GTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAA 166449 | || | || || |||| ||||| || | || |||| || | ||||| || Sbjct 777 ATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATACAGATTTAGTCAAGAGAAA 718 Query 166450 GAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATC 166497 ||||| || || |||| | |||||||||||||||| || || |||||| Sbjct 717 GAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCGATTGATC 670 >seq110764 Length=2751 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 166525 CGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTT 166584 || || || ||||||||||| ||||| |||||||| || || ||||||||||| || | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 166585 GGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 166631 || || ||| ||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq61876 Length=7060 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| | ||||| ||| ||||||| |||||||||||| Sbjct 2516 CTCCCGTTGTTCCTCAGTAGCTCAGTGATAGAGCGGTCGGCTGTTAACCGATTGGTCGTA 2575 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 |||| |||||||| ||||||| Sbjct 2576 GGTTTGAATCCTACTTGGGGAG 2597 >seq52475 Length=6810 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | || ||||||||||||| || ||||| | ||||||||| |||||||||||| Sbjct 5855 CTCCCATTGTTTCTCAGTAGCTCAGTGGTAGAGCAGTTGACTGTTAACCGATTGGTCGTA 5914 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 |||| |||||||| ||||||| Sbjct 5915 GGTTTGAATCCTACTTGGGGAG 5936 >seq71300 Length=7436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 18137 AGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATCCTACCTGG 18196 ||||||| || ||||| ||| ||||||| |||||||||||||||||||||||||| ||| Sbjct 778 AGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAATCCTACTTGG 837 Query 18197 GGAG 18200 |||| Sbjct 838 GGAG 841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560392145909200