Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq85463 100 8e-17 seq31467 96.9 1e-15 seq99465 89.7 2e-13 >seq85463 Length=6098 Score = 100 bits (110), Expect = 8e-17 Identities = 174/248 (70%), Gaps = 15/248 (6%) Strand=Plus/Plus Query 41938 TCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCT 41997 ||| || || ||||| || | ||||||||||||||||| || | || || ||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 41998 TCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTC 42057 || ||| | || ||||| |||||||| || ||||||||||| || ||| | || || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACT--GCTAG--GTATC 4134 Query 42058 TAC--CATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGAT 42115 | |||||| ||||| | ||||||||||| |||||| |||| | | |||| Sbjct 4135 AGCGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATC------CGTAGTTGAT 4188 Query 42116 GGAC-AGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGT 42174 | | | || | || | |||| ||| || | |||||||| |||||||| | || || Sbjct 4189 AGTCAAAGTCA--AAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGT 4246 Query 42175 GATGCATG 42182 ||||||| Sbjct 4247 TATGCATG 4254 >seq31467 Length=18065 Score = 96.9 bits (106), Expect = 1e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| | |||||||||||||| ||||| ||||| || || ||||| || || ||| Sbjct 5373 GGTTACAGATCCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTT 5314 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 | || | ||||||||||||||||| || || || || ||| | || |||||||| Sbjct 5313 AGACGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTA 5254 Query 42011 GCTGCCTG 42018 ||||| || Sbjct 5253 GCTGCTTG 5246 >seq99465 Length=4513 Score = 89.7 bits (98), Expect = 2e-13 Identities = 195/291 (67%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 41673 TTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACA 41732 |||| || || ||||||||||| |||||| || || || | || ||||||| || Sbjct 2965 TTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCA 3024 Query 41733 TGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGG 41792 || | || ||| |||||||||| |||||||||||||| |||| ||| || || | Sbjct 3025 TGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAG 3079 Query 41793 CCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCAC 41852 | || ||||| | || | ||| ||||||||| ||| | |||| || || Sbjct 3080 CGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 3139 Query 41853 TCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGG 41912 | || | | || || ||| | | | || | |||||||| || |||| || | Sbjct 3140 TGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTC-AGGGA 3198 Query 41913 AAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCT 41963 |||| |||| ||||| || ||||| | || || ||||| || | |||| Sbjct 3199 AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146002584042072