Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq99465 143 8e-30 seq85463 123 7e-24 seq71831 118 3e-22 seq31467 118 3e-22 seq46960 102 2e-17 >seq99465 Length=4513 Score = 143 bits (158), Expect = 8e-30 Identities = 218/308 (71%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 42712 TTCCTTG-TCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTC 42770 || |||| |||| | | |||| ||||| |||||| ||||| ||||||| || ||||| Sbjct 2948 TTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTC 3007 Query 42771 CGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTT 42830 |||| |||||||||||| | || ||| ||||||| ||||| ||||||||||| | Sbjct 3008 TTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----T 3062 Query 42831 CCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAG 42890 |||||| || || || || ||||| | || || | ||| |||||||||||| Sbjct 3063 TCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTC 3122 Query 42891 TCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTA 42950 | || || ||| | | | | |||| || ||||| |||| ||| | || || Sbjct 3123 CTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTA 3182 Query 42951 CAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACG 43010 ||| ||||||| || | | || ||||||| || || || || ||||||||||||| || Sbjct 3183 CAAATTCGGTC-AGGGAAAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCG 3241 Query 43011 GCTTATCT 43018 | |||| Sbjct 3242 ATTGATCT 3249 >seq85463 Length=6098 Score = 123 bits (136), Expect = 7e-24 Identities = 176/244 (72%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 42994 CATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTT 43052 |||||||||||||| || | |||||||||||||| | |||| | || ||| || || Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCCACAACTCTCGTTCGTT 4078 Query 43053 GCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAG 43112 |||||| | || || |||||||| || ||||| |||||||||||| || || |||| Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACT--GCTAGGTATCAG 4136 Query 43113 TACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA 43172 ||||| || || | |||||||| || |||||| |||| | ||||||| ||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 43173 TC-ATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGA 43231 || | || | |||| |||||| | || ||||| |||||||| | || || | Sbjct 4197 TCAAAGT--------CGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTA 4248 Query 43232 TGCA 43235 |||| Sbjct 4249 TGCA 4252 >seq71831 Length=3823 Score = 118 bits (130), Expect = 3e-22 Identities = 210/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 42712 TTCCTTG-TCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTC 42770 || |||| | || ||| |||| ||||| ||||| ||||| |||||||| || ||||| Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 42771 CGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTT 42830 |||| |||||||||||| | || || ||||||| || ||||||||||| | || || Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCA-CACATTCTTATGTACCCATT 857 Query 42831 CCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAG 42890 |||||| | | || || | |||| | || || | ||| | |||||||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGT-T 798 Query 42891 TCTTGTC-ACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCT 42949 |||| | || ||| | | | | |||| || ||||| ||| ||| | || | Sbjct 797 CCTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGAT 738 Query 42950 ACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGAC 43009 ||| || |||||||| | || |||||||| || | | || |||||||||||||| | Sbjct 737 ACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCC 678 Query 43010 G 43010 | Sbjct 677 G 677 >seq31467 Length=18065 Score = 118 bits (130), Expect = 3e-22 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 42841 GGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACC 42900 || || || || ||||| || || || | ||| |||||||||||| | || || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 42901 TCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGT 42960 ||| | | | | ||||| || ||||| ||| ||| | || |||| | |||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 42961 CAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTC 43020 |||||||| || |||||||| || || || || |||||||||||| |||| | |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 43021 CAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTG 43073 |||||||| | |||| || || ||| || || ||||||||||| || ||||| Sbjct 5298 CAATATGC-TAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq46960 Length=374 Score = 102 bits (112), Expect = 2e-17 Identities = 117/152 (77%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 42321 TCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCT 42379 |||||| || | ||||| ||||| ||||||| |||| || | | | || || | | Sbjct 9 TCTTTACATTAGATGGTTCGGTGTTTTGATGAT-CCCTACCTCATTGACCGCAACTTC-T 66 Query 42380 GT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCT 42438 || |||||| | | ||||||||||| ||||| ||||| |||||||| |||||||||| | Sbjct 67 GTATTTATTATTACCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACTT 126 Query 42439 GTCTCTGGCTCTCTTCTGTATGGCAACAACAT 42470 || ||||| | ||| || ||||| |||||||| Sbjct 127 GTTTCTGGATATCTACTTTATGGGAACAACAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143324868787164