Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq85463 107 6e-19 >seq85463 Length=6098 Score = 107 bits (118), Expect = 6e-19 Identities = 180/258 (70%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 25899 GAGCATT-ACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCC 25957 ||||||| | | | ||||||||||| | || |||||||| ||||| | | |||| || Sbjct 4267 GAGCATTTATGAGCATGCATAACTTCTATACCAAGGTTAGCACGGTTGATGATATCAACC 4208 Query 25958 CATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGACTGGTTAAAGTTAAAACCATT 26016 || | | || | || || ||| ||||| || | |||||| || |||||||| Sbjct 4207 CACG--------ACTTTGACTTTGACTATCAACTACGGATTTGTTAAAATTGAAACCATT 4156 Query 26017 TAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCA 26076 ||| || || ||||| || |||||| ||| || | ||| || || || || ||||| Sbjct 4155 TAGATTGAAGGCCATGACGCTGATACC--TAGCAGTGAACCAAATACCCACTACAGGCCA 4098 Query 26077 AGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAA 26136 || ||| || | ||| || | ||||| ||| | ||||| ||||| || || || || Sbjct 4097 AGCAGCTAGGACGAAGTGTAACGAACGAGAGTTGTGGAAACTAGCATATTGGAAGATCAA 4038 Query 26137 TCTCCCAAAGTACCCGTG 26154 || |||||||| || || Sbjct 4037 TCGGCCAAAGTAACCATG 4020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147498014518560