Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq31467 132 6e-26 seq71831 114 2e-20 seq46960 98.7 1e-15 seq110764 89.7 6e-13 >seq31467 Length=18065 Score = 132 bits (146), Expect = 6e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 155521 GGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACA 155580 || ||||| ||||| ||||| || || || ||| ||||||||| ||||| ||||| || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 155581 TCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGA 155640 ||| | ||| | ||||| || || | || ||| || | ||||||| | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 155641 CAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTC 155700 ||||| |||||||||||||| || || || |||||||| ||||| | || | |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 155701 CAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATG 155753 || ||||| ||||||||||| | | |||||||| || ||||| || Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq71831 Length=3823 Score = 114 bits (126), Expect = 2e-20 Identities = 207/300 (69%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 155392 TTCCTTG-TTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTC 155450 || |||| |||| || | |||||||| ||| | ||||| |||||||| || || || Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 155451 TGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTT 155510 | ||||||| |||| ||| | || || | || || |||| || |||||| |||| || Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACAC-ATTCTTATGTACCCATT 857 Query 155511 CCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTC 155570 || ||| | | ||||| |||| | || || || || ||| || |||||| ||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 155571 ATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTA 155630 |||| || ||| | ||| | |||| || || | || ||| || | || || Sbjct 796 CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATA 737 Query 155631 CAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCG 155690 || || | ||||| ||||||||||||| || | | |||||||| ||||| || || Sbjct 736 CAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCG 677 >seq46960 Length=374 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 155014 TGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCG-CTGCTGCTACATGCTTCATTGTCGC 155072 |||||||||||| | ||||||||| |||| | | | || || | || ||| | | Sbjct 22 TGGTTCGGTGTTTTGATGATCCCTA-CCTCATTGACCGCAACTTCTGTATTTATTATTAC 80 Query 155073 CTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTT 155132 |||||||||||| ||||| ||||| ||||||||||||||||||| || |||| | | | Sbjct 81 CTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACTTGTTTCTGGATATCT 140 Query 155133 AATGTATGGTAACAACAT 155150 | | ||||| |||||||| Sbjct 141 ACTTTATGGGAACAACAT 158 >seq110764 Length=2751 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 155734 CACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCA 155793 ||||||||||| ||||| |||||||| || | |||||| |||||| | ||| | Sbjct 1549 CACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAAC 1608 Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGT 155837 || ||||| |||||||| ||||||||||| |||||||| | ||| Sbjct 1609 ACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATTTGT 1652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583943377493080