Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq99465 114 4e-21 seq71831 109 2e-19 seq31467 96.9 1e-15 >seq99465 Length=4513 Score = 114 bits (126), Expect = 4e-21 Identities = 206/300 (69%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 40797 CCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATAC 40856 ||||||||||| | |||||||||||| ||||||| || | ||||||| || || || Sbjct 3238 CCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGACCGAATTTGTAA 3180 Query 40857 CCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTT 40916 || | || | |||| |||| ||||| | || || | ||||| || | | Sbjct 3179 CCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGTTACCAAGGAA 3120 Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||||| || | | || | || || || || ||||| |||||| | Sbjct 3119 CCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTCACATATGAA-- 3062 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 ||||| ||||| || || || || | ||| |||| |||||||||||| || | | Sbjct 3061 ---TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGAAAGTACAAGAA 3005 Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 |||||| ||||||||||||||| ||| || ||||| | | | || | ||||| ||| Sbjct 3004 ATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAATTTGGTAGATCAAGAAAACA 2945 >seq71831 Length=3823 Score = 109 bits (120), Expect = 2e-19 Identities = 205/300 (68%), Gaps = 1/300 (0%) Strand=Plus/Plus Query 40797 CCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATAC 40856 ||||||||||| || || | | |||| |||||||| || || |||| ||| | || Sbjct 680 CCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACTAAATCTGTAT 739 Query 40857 CCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTT 40916 || | || |||||| |||| ||||| | || || | ||||| | | | Sbjct 740 CCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGTTGCCAAGGAA 799 Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || |||||| || || | | || | | || | || |||| | |||||| ||| Sbjct 800 CCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAACATATGAAAT 859 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 |||| ||| ||||||| ||| || || | || |||| |||||||||||| || | | Sbjct 860 GGGTACATAAGAATGT-GTGCTCAGCCTAAAATACAATCATGAAGTTGAAAGTACAAGAA 918 Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||||||| ||||||||||||| | ||| || ||||| | ||| |||| ||||| ||| Sbjct 919 ATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACA 978 >seq31467 Length=18065 Score = 96.9 bits (106), Expect = 1e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||||| | ||||||||||||| || ||| |||||||| ||||||||| || || | Sbjct 5247 AAGCAGCTAGAAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCA 5306 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || | ||||||||| || || |||||||| |||||||| || | || ||||| | Sbjct 5307 ATCGTCTAAAGTAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGGATC 5366 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAA 40911 | || || | || |||||| |||| ||||| |||| || | ||||| || | Sbjct 5367 TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCCGATCAAACTAGAAGTTACCA 5426 Query 40912 GGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCG 40964 | || ||||||||| || | | || || || || || || |||||| Sbjct 5427 AGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCG 5479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143494223093262