Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq99465 165 9e-36 seq31467 140 4e-28 seq85463 105 8e-18 seq110764 91.5 2e-13 >seq99465 Length=4513 Score = 165 bits (182), Expect = 9e-36 Identities = 237/332 (71%), Gaps = 9/332 (3%) Strand=Plus/Minus Query 67597 TGAAAGATGCATACTGGA---AGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGT 67653 ||| |||| |||||| | ||||||| || || ||||| |||| ||||| || || | Sbjct 3270 TGATAGATTCATACTACACATAGATCAATCGGCCAAAGTAACCATATGCAGCTACGATAT 3211 Query 67654 TGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAG 67713 | |||| |||| | | || ||||| |||||||| | || | || | || || | Sbjct 3210 TATAAGCTTCTT-TCCCTGACCGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGG 3152 Query 67714 TTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCAC 67773 ||| ||||| | | |||||| || | ||||| ||||||||||| || || || || Sbjct 3151 TTTACCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGT 3092 Query 67774 CGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTT 67833 |||||||||| ||||| || |||||| | |||||||| || || ||||| || | Sbjct 3091 CGAATACACCCGCTACGCCTCACATATGAA-----TGCATAAGAATATTATGCTCAGCCT 3037 Query 67834 GGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAG 67893 ||| || | |||| |||| ||||||| |||||| || ||||||| | ||||| ||| Sbjct 3036 AGAATACAATCATGAAGTTGAAAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAAC 2977 Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACA 67925 |||||||| | | |||| |||||| ||| Sbjct 2976 TTCCTTGACCAATTTGGTAGATCAAGAAAACA 2945 >seq31467 Length=18065 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 67563 GCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAG 67622 ||||| || |||||||| | | |||||||||||| ||||| ||||||||||| Sbjct 5249 GCAGCTAGAAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAAT 5308 Query 67623 CGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTG 67682 || | ||||| |||||||| || || || || ||||| ||||| ||||| ||| | || Sbjct 5309 CGTCTAAAGTAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGGATCTG 5368 Query 67683 TAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGA 67742 ||||| | || || || | || || ||||| | ||| | | |||||| || | Sbjct 5369 TAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCCGATCAAACTAGAAGTTACCAAG 5428 Query 67743 GAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCC 67792 ||||| ||||||||||| || || || || ||||||||||| ||||| || Sbjct 5429 GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCC 5478 >seq85463 Length=6098 Score = 105 bits (116), Expect = 8e-18 Identities = 199/291 (68%), Gaps = 24/291 (8%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| ||||| |||| | | || ||||| | |||||||||| || Sbjct 4288 TCAACAGCAGCTAGGTCTAGAGAGCATTTATGAGCAT---------GCATAACTTCTATA 4238 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTT-ACCACCTGCGTC 67471 ||||| || | ||| | ||| || |||| | | ||||| || | || Sbjct 4237 CCAAGGTTAGCACGGTTGATGATATCAACCCACGACTT--TGACTTTGACTA------TC 4186 Query 67472 AACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATA--GTTGACACACCC 67529 ||| ||||||| ||| || |||||||| || || ||||| ||||| | ||| || Sbjct 4185 AACTACGGATTTGTTAAAATTGAAACCATTTAGATTGAAGGCCATGACGCTGATACC--- 4129 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | ||||||||||| || | || ||||| | ||||| |||| |||||| | | Sbjct 4128 -TAGCAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACGAAGTGTAACGAACGA 4070 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGA 67640 ||||||| |||| ||||| ||||||||||| || || ||||| |||||| Sbjct 4069 GAGTTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATGA 4019 >seq110764 Length=2751 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 67480 ATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGA 67539 |||||||||| ||||||||||| |||||||| ||||| || | ||| | ||||||| Sbjct 1648 ATTGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATGGTGTTGATACCTAAAGCAGTGA 1589 Query 67540 ACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTG 67579 ||||||| | || ||||| | ||||| ||||||||||| Sbjct 1588 ACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTG 1549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566082655127880