Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq31467 170 2e-37
seq115592 163 3e-35
seq99465 159 4e-34
seq85463 145 9e-30
seq71831 140 4e-28
seq110764 122 1e-22
seq46960 109 6e-19
seq61876 87.8 2e-12
seq52475 87.8 2e-12
seq71300 86.0 7e-12
seq100051 82.4 9e-11
>seq31467
Length=18065
Score = 170 bits (188), Expect = 2e-37
Identities = 178/234 (76%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 68041 CATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATC 68100
|| ||||| || |||||||| | |||||| ||||||||||| ||||| |||||||||
Sbjct 5246 CAAGCAGCTAGAAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATC 5305
Query 68101 AGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAAC 68160
| || | ||||| ||||| || || || || || ||||| ||||| ||||||||| |
Sbjct 5306 AATCGTCTAAAGTAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGGAT 5365
Query 68161 TTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACC 68220
||||||| | || || ||| |||| |||||||| | | || |||||| |||
Sbjct 5366 CTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCCGATCAAACTAGAAGTTACC 5425
Query 68221 AGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCG 68274
| |||||||||||| |||||||| || || || || ||||| ||||| ||||||
Sbjct 5426 AAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCG 5479
>seq115592
Length=218
Score = 163 bits (180), Expect = 3e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 66831 AACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAGACCAG 66890
|||||||||||||| ||||| | |||||| ||| |||| |||||||| || |||||
Sbjct 2 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 61
Query 66891 AAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTG 66950
|||||||| ||||| ||||| || ||||||||||| ||||||| | || || || |
Sbjct 62 AAGCGGTTAGCAGTGACCATGGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 121
Query 66951 AAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATG 67010
|| || ||||| |||||||||||| | | |||||| ||||| ||| ||||||||||
Sbjct 122 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATA 181
Query 67011 GCAGAAAGCAATGCACCACCCAGGATACCTGCTAC 67045
|| | ||||| ||| | |||| | ||| || ||
Sbjct 182 GCGCATAGCAAAGCAGCCCCCAATACACCAGCAAC 216
>seq99465
Length=4513
Score = 159 bits (176), Expect = 4e-34
Identities = 222/310 (72%), Gaps = 6/310 (2%)
Strand=Plus/Minus
Query 68096 AGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGAC 68155
|||||| || || ||||| |||| |||||| || || || |||| |||| | | ||||
Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGAC 3191
Query 68156 CGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAG 68215
|||| |||||||| | || | ||| |||| ||||||| | | || |||||
Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131
Query 68216 TAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGA 68275
| |||| |||||||||||| |||||||| || || || | ||||| || || |||||
Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071
Query 68276 GCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGA 68335
|||||| | ||||| || || || ||||| || | ||| || | |||| ||||||
Sbjct 3070 ACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016
Query 68336 AAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGA 68395
|||||| |||||| || ||||||| | ||||| || |||||||| | | ||||
Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAATTTGGTAGA 2956
Query 68396 CCAGGAAGAC 68405
|| ||| ||
Sbjct 2955 TCAAGAAAAC 2946
>seq85463
Length=6098
Score = 145 bits (160), Expect = 9e-30
Identities = 205/288 (71%), Gaps = 20/288 (7%)
Strand=Plus/Minus
Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893
||| ||||||| ||||| |||| | | || || || |||||||||||| |||
Sbjct 4288 TCAACAGCAGCTAGGTCTAGAGAGCATTTATGAGC---------ATGCATAACTTCTATA 4238
Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTT-ACCAGAACTATC 67952
|| | ||| ||||||| | || |||| | || || || ||||||
Sbjct 4237 CCAAGGTTAGCACGGTTGATGATATCAACCCACG--------ACTTTGACTTTGACTATC 4186
Query 67953 AAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAG 68012
|| | || | ||| || ||||||||||| || ||||| |||||| ||| | ||| ||
Sbjct 4185 AACTACGGATTTGTTAAAATTGAAACCATTTAGATTGAAGGCCATGACGCTGATACCTAG 4126
Query 68013 TGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGA 68072
|||||||||| ||||| || |||||||| ||||| |||| |||||| | |||||| ||
Sbjct 4125 --CAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACGAAGTGTAACGAACGAGA 4068
Query 68073 GTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATG 68120
||||| ||| ||||| |||||||||| || || ||||| |||||
Sbjct 4067 GTTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATG 4020
>seq71831
Length=3823
Score = 140 bits (154), Expect = 4e-28
Identities = 217/309 (70%), Gaps = 1/309 (0%)
Strand=Plus/Plus
Query 68097 GATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACC 68156
||||| || || ||||| ||||| || | | || || ||||| |||| |||||||
Sbjct 670 GATCAATCGGCCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACT 729
Query 68157 GAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGT 68216
|| |||| || | || || ||| |||| ||||||| | | || ||||||
Sbjct 730 AAATCTGTATCCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGT 789
Query 68217 AACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAG 68276
||| |||||||||||| ||||||| || || || | |||| | ||| |||| |
Sbjct 790 TGCCAAGGAACCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAA 849
Query 68277 CATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAA 68336
|||||| || |||| ||| || ||| ||||||| || | || || | |||| |||||||
Sbjct 850 CATATGAAATGGGTACATAAGAATG-TGTGCTCAGCCTAAAATACAATCATGAAGTTGAA 908
Query 68337 AGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGAC 68396
||||| |||||| || |||||||| | ||| | || |||||||| | || || |
Sbjct 909 AGTACAAGAAATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTAAAT 968
Query 68397 CAGGAAGAC 68405
|| ||| ||
Sbjct 969 CAAGAAAAC 977
>seq110764
Length=2751
Score = 122 bits (134), Expect = 1e-22
Identities = 91/107 (85%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 67963 TGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAAC 68022
|||||||| |||||||| || |||||||| ||||||||| | | ||| | |||||||||
Sbjct 1646 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATGGTGTTGATACCTAAAGCAGTGAAC 1587
Query 68023 CAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACG 68069
|||||||| || |||||||| ||||| ||||||||||| | ||||||
Sbjct 1586 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACG 1540
>seq46960
Length=374
Score = 109 bits (120), Expect = 6e-19
Identities = 118/151 (78%), Gaps = 4/151 (3%)
Strand=Plus/Minus
Query 68644 ATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACA 68703
|||||||| ||||| || || | |||| |||| |||||||||||||||| || || ||
Sbjct 158 ATGTTGTTCCCATAAAGTAGATATCCAGAAACAAGTTCACGAATACCATCAATATCTACT 99
Query 68704 GGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGA 68761
|| |||||||| ||||||| | || || ||||| ||||| | ||| || |||||||
Sbjct 98 GGAGGAGCAGCAATGAAGGTAATAATAAATACAGA-AGTTGCGGTCAATGAG-GTAGGGA 41
Query 68762 TCATCAGGACGCCGAACCAACCAACGTAAAG 68792
|||||| || |||||||| | || ||||||
Sbjct 40 TCATCAAAACACCGAACCATCTAATGTAAAG 10
>seq61876
Length=7060
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| ||
Sbjct 2605 AATCAAAT--CTCCCCAAGTAGGATTCAAACCTACGACCAATCGGTTAACAGCCGACCGC 2548
Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582
||| | |||||||||||||||
Sbjct 2547 TCTATCACTGAGCTACTGAGGA 2526
>seq52475
Length=6810
Score = 87.8 bits (96), Expect = 2e-12
Identities = 68/80 (85%), Gaps = 2/80 (3%)
Strand=Plus/Minus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| |||||||||||||||| ||||||||| | ||
Sbjct 5944 AATCAAAT--CTCCCCAAGTAGGATTCAAACCTACGACCAATCGGTTAACAGTCAACTGC 5887
Query 35561 TCTGCCGCTGAGCTACTGAG 35580
||| || |||||||||||||
Sbjct 5886 TCTACCACTGAGCTACTGAG 5867
>seq71300
Length=7436
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 2/74 (3%)
Strand=Plus/Minus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 849 AATCAAAT--CTCCCCAAGTAGGATTTGAACCTACGACCAATCGGTTAACAGCCGACCGC 792
Query 35561 TCTGCCGCTGAGCT 35574
||| || |||||||
Sbjct 791 TCTACCACTGAGCT 778
>seq100051
Length=9184
Score = 82.4 bits (90), Expect = 9e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68017 GTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTG 68076
|||||||||||||| | |||||||| |||| ||||||||||| | |||||| || |||
Sbjct 2408 GTGAACCAGATACCCATTACAGGCCAAGCAGTTAGGAAGAAGTGTAACGAACGAGAATTG 2467
Query 68077 TTGAACGATGCATACTGGAAGATCA 68101
||||| ||||| | ||||||||
Sbjct 2468 TTGAAACTAGCATATTAGAAGATCA 2492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571182067094760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |