Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq31467 170 2e-37 seq115592 163 3e-35 seq99465 159 4e-34 seq85463 145 9e-30 seq71831 140 4e-28 seq110764 122 1e-22 seq46960 109 6e-19 seq61876 87.8 2e-12 seq52475 87.8 2e-12 seq71300 86.0 7e-12 seq100051 82.4 9e-11 >seq31467 Length=18065 Score = 170 bits (188), Expect = 2e-37 Identities = 178/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68041 CATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATC 68100 || ||||| || |||||||| | |||||| ||||||||||| ||||| ||||||||| Sbjct 5246 CAAGCAGCTAGAAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATC 5305 Query 68101 AGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAAC 68160 | || | ||||| ||||| || || || || || ||||| ||||| ||||||||| | Sbjct 5306 AATCGTCTAAAGTAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGGAT 5365 Query 68161 TTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACC 68220 ||||||| | || || ||| |||| |||||||| | | || |||||| ||| Sbjct 5366 CTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCCGATCAAACTAGAAGTTACC 5425 Query 68221 AGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCG 68274 | |||||||||||| |||||||| || || || || ||||| ||||| |||||| Sbjct 5426 AAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCG 5479 >seq115592 Length=218 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 66831 AACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAGACCAG 66890 |||||||||||||| ||||| | |||||| ||| |||| |||||||| || ||||| Sbjct 2 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 61 Query 66891 AAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTG 66950 |||||||| ||||| ||||| || ||||||||||| ||||||| | || || || | Sbjct 62 AAGCGGTTAGCAGTGACCATGGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 121 Query 66951 AAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATG 67010 || || ||||| |||||||||||| | | |||||| ||||| ||| |||||||||| Sbjct 122 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATA 181 Query 67011 GCAGAAAGCAATGCACCACCCAGGATACCTGCTAC 67045 || | ||||| ||| | |||| | ||| || || Sbjct 182 GCGCATAGCAAAGCAGCCCCCAATACACCAGCAAC 216 >seq99465 Length=4513 Score = 159 bits (176), Expect = 4e-34 Identities = 222/310 (72%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 68096 AGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGAC 68155 |||||| || || ||||| |||| |||||| || || || |||| |||| | | |||| Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGAC 3191 Query 68156 CGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAG 68215 |||| |||||||| | || | ||| |||| ||||||| | | || ||||| Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131 Query 68216 TAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGA 68275 | |||| |||||||||||| |||||||| || || || | ||||| || || ||||| Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071 Query 68276 GCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGA 68335 |||||| | ||||| || || || ||||| || | ||| || | |||| |||||| Sbjct 3070 ACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016 Query 68336 AAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGA 68395 |||||| |||||| || ||||||| | ||||| || |||||||| | | |||| Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACCAATTTGGTAGA 2956 Query 68396 CCAGGAAGAC 68405 || ||| || Sbjct 2955 TCAAGAAAAC 2946 >seq85463 Length=6098 Score = 145 bits (160), Expect = 9e-30 Identities = 205/288 (71%), Gaps = 20/288 (7%) Strand=Plus/Minus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||||||| ||||| |||| | | || || || |||||||||||| ||| Sbjct 4288 TCAACAGCAGCTAGGTCTAGAGAGCATTTATGAGC---------ATGCATAACTTCTATA 4238 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTT-ACCAGAACTATC 67952 || | ||| ||||||| | || |||| | || || || |||||| Sbjct 4237 CCAAGGTTAGCACGGTTGATGATATCAACCCACG--------ACTTTGACTTTGACTATC 4186 Query 67953 AAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAG 68012 || | || | ||| || ||||||||||| || ||||| |||||| ||| | ||| || Sbjct 4185 AACTACGGATTTGTTAAAATTGAAACCATTTAGATTGAAGGCCATGACGCTGATACCTAG 4126 Query 68013 TGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGA 68072 |||||||||| ||||| || |||||||| ||||| |||| |||||| | |||||| || Sbjct 4125 --CAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACGAAGTGTAACGAACGAGA 4068 Query 68073 GTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATG 68120 ||||| ||| ||||| |||||||||| || || ||||| ||||| Sbjct 4067 GTTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATG 4020 >seq71831 Length=3823 Score = 140 bits (154), Expect = 4e-28 Identities = 217/309 (70%), Gaps = 1/309 (0%) Strand=Plus/Plus Query 68097 GATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACC 68156 ||||| || || ||||| ||||| || | | || || ||||| |||| ||||||| Sbjct 670 GATCAATCGGCCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACT 729 Query 68157 GAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGT 68216 || |||| || | || || ||| |||| ||||||| | | || |||||| Sbjct 730 AAATCTGTATCCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGT 789 Query 68217 AACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAG 68276 ||| |||||||||||| ||||||| || || || | |||| | ||| |||| | Sbjct 790 TGCCAAGGAACCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAA 849 Query 68277 CATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAA 68336 |||||| || |||| ||| || ||| ||||||| || | || || | |||| ||||||| Sbjct 850 CATATGAAATGGGTACATAAGAATG-TGTGCTCAGCCTAAAATACAATCATGAAGTTGAA 908 Query 68337 AGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGAC 68396 ||||| |||||| || |||||||| | ||| | || |||||||| | || || | Sbjct 909 AGTACAAGAAATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACCAATTGGGTAAAT 968 Query 68397 CAGGAAGAC 68405 || ||| || Sbjct 969 CAAGAAAAC 977 >seq110764 Length=2751 Score = 122 bits (134), Expect = 1e-22 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 67963 TGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAAC 68022 |||||||| |||||||| || |||||||| ||||||||| | | ||| | ||||||||| Sbjct 1646 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATGGTGTTGATACCTAAAGCAGTGAAC 1587 Query 68023 CAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACG 68069 |||||||| || |||||||| ||||| ||||||||||| | |||||| Sbjct 1586 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACG 1540 >seq46960 Length=374 Score = 109 bits (120), Expect = 6e-19 Identities = 118/151 (78%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 68644 ATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACA 68703 |||||||| ||||| || || | |||| |||| |||||||||||||||| || || || Sbjct 158 ATGTTGTTCCCATAAAGTAGATATCCAGAAACAAGTTCACGAATACCATCAATATCTACT 99 Query 68704 GGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGA 68761 || |||||||| ||||||| | || || ||||| ||||| | ||| || ||||||| Sbjct 98 GGAGGAGCAGCAATGAAGGTAATAATAAATACAGA-AGTTGCGGTCAATGAG-GTAGGGA 41 Query 68762 TCATCAGGACGCCGAACCAACCAACGTAAAG 68792 |||||| || |||||||| | || |||||| Sbjct 40 TCATCAAAACACCGAACCATCTAATGTAAAG 10 >seq61876 Length=7060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| || Sbjct 2605 AATCAAAT--CTCCCCAAGTAGGATTCAAACCTACGACCAATCGGTTAACAGCCGACCGC 2548 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| | ||||||||||||||| Sbjct 2547 TCTATCACTGAGCTACTGAGGA 2526 >seq52475 Length=6810 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||||||||||| ||||||||| | || Sbjct 5944 AATCAAAT--CTCCCCAAGTAGGATTCAAACCTACGACCAATCGGTTAACAGTCAACTGC 5887 Query 35561 TCTGCCGCTGAGCTACTGAG 35580 ||| || ||||||||||||| Sbjct 5886 TCTACCACTGAGCTACTGAG 5867 >seq71300 Length=7436 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||||||||||||||||||||| ||||||| ||| || Sbjct 849 AATCAAAT--CTCCCCAAGTAGGATTTGAACCTACGACCAATCGGTTAACAGCCGACCGC 792 Query 35561 TCTGCCGCTGAGCT 35574 ||| || ||||||| Sbjct 791 TCTACCACTGAGCT 778 >seq100051 Length=9184 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68017 GTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTG 68076 |||||||||||||| | |||||||| |||| ||||||||||| | |||||| || ||| Sbjct 2408 GTGAACCAGATACCCATTACAGGCCAAGCAGTTAGGAAGAAGTGTAACGAACGAGAATTG 2467 Query 68077 TTGAACGATGCATACTGGAAGATCA 68101 ||||| ||||| | |||||||| Sbjct 2468 TTGAAACTAGCATATTAGAAGATCA 2492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571182067094760