Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq109031 100 5e-16 seq99159 91.5 3e-13 seq70367 91.5 3e-13 seq55416 86.0 1e-11 >seq109031 Length=8095 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || | ||| ||||||||||| || | ||| || ||| || ||||| Sbjct 306 ATTCCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCC 247 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || ||| ||| |||| ||||| ||||||||||| | ||||| || || || Sbjct 246 GCCAAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGT 187 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || ||||| || | || | ||| || || || || ||| Sbjct 186 GGGATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCC 127 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || | || || ||||| || ||||| Sbjct 126 ACTTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 >seq99159 Length=5808 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | ||||| |||| ||| | |||| ||| || || || ||||| Sbjct 2488 ATACCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCT 2547 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | |||||| || ||||| || || || || || || ||| Sbjct 2548 GCAAGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGA 2607 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || ||||| | |||| || || || || || || Sbjct 2608 GGGATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCC 2667 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || |||||||| ||||| || || || ||||| Sbjct 2668 ACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 >seq70367 Length=2979 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | | || |||| ||||| || | |||||| ||| || ||||| Sbjct 287 ATACCACCACGGAGCCTCAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCC 228 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | || ||||||||||| || | ||||| ||||| || Sbjct 227 GCCAAGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGT 168 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| || | || |||||| ||||| ||| Sbjct 167 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCG 108 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || || || ||||| || ||||| Sbjct 107 ACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 58 >seq55416 Length=9261 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| || || | || |||||| ||| || |||||||| |||||||| |||| ||| Sbjct 3955 ATATTGTAATCTGCCAAGGTTCTACCATCTTCCAATTGTTTACCGGCAAATATTAGCCTC 4014 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 || |||||||||||||| |||||||| || || Sbjct 4015 TGCTGATCAGGAGGTATGCCTTCTTTGTCCTG 4046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898282505759760