Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq111813 96.9 5e-15 seq99159 96.9 5e-15 >seq111813 Length=4153 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || || || || ||||||||||| || || || || || || || || Sbjct 1328 AATGCAGATTTTCATCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 1269 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || |||||| || || || || || |||||||| ||||| || || Sbjct 1268 CGACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCA 1209 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | |||| | ||| |||||||||||||||||| | | || || | || || || Sbjct 1208 GCAGCGGCTGATATTTGCGGGTAAGCAGCTCGAAGATGGCTGGACGCTAGCCGACTACAA 1149 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| |||| |||||| | ||| | | || ||||| || Sbjct 1148 CATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTTTGAGAGGAGG 1101 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| ||| | |||||||| || || || | || || || || Sbjct 1990 ATGCAAATCTTTGTTAAGACACTTACTGGAAAGACAATCACCCTCGAGGTTGAGAGCTCC 1931 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || ||||| || ||||| || ||||| || || Sbjct 1930 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 1871 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | || || ||||||||||| ||| |||||| | | ||||| | Sbjct 1870 CAGAGGTTGATCTTCGCTGGAAAGCAGCTCGATGATGGCAGAACCCTTGCGGATTACA-- 1813 Query 156003 ATATCCAAAGAG 156014 ||||||||| || Sbjct 1812 ATATCCAAAAAG 1801 >seq99159 Length=5808 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || | || || ||||| || || | || || || ||| Sbjct 1806 AATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATAACCCTGGAGGTTGAGAGTTC 1747 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || |||||| ||| || ||||| || ||||| ||||| || || || Sbjct 1746 GGACACAATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCCCCGGACCA 1687 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||||| ||| || ||||||||||| ||| | ||| || | || || || Sbjct 1686 GCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTAGCGGACTACAA 1627 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| || ||| |||| |||||| | ||||| Sbjct 1626 TATTCAGAAGGAGTCGACTCTTCATCTGGTGTT 1594 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| || |||||||| || ||||| | || || || || Sbjct 2033 ATGCAAATCTTTGTTAAAACCTTAACTGGAAAGACCATTACTCTTGAGGTTGAGAGCTCC 1974 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || || || |||||||| || ||||| |||||||| || Sbjct 1973 GATACCATAGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATTCCTCCAGATCAG 1914 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||||| || || ||||||||||| ||| Sbjct 1913 CAGAGGTTGATTTTCGCTGGCAAGCAGCTCGATGAT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730755959238800