Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq99159 105 1e-17 seq9178 104 5e-17 seq82767 96.9 7e-15 seq55416 96.9 7e-15 seq70367 91.5 3e-13 >seq99159 Length=5808 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || | | ||||||| ||||||| | || || ||||| || || || || Sbjct 1851 GATGTTGTAGTCGGCAAGTGTTCGTCCATCATCGAGCTGCTTGCCAGCGAAAATCAACCT 1910 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || || || || |||||||| || || || ||||| ||| | Sbjct 1911 CTGCTGATCTGGAGGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCTATGGT 1970 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || ||||||||||| || |||||||| ||||||| ||| || || Sbjct 1971 ATCGGAGCTCTCAACCTCAAGAGTAATGGTCTTTCCAGTTAAGGTTTTAACAAAGATTTG 2030 Query 192534 CAT 192536 ||| Sbjct 2031 CAT 2033 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || ||||| | |||| ||| || || || || || Sbjct 2488 ATACCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCT 2547 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | |||||| || |||||||| || || || || || || Sbjct 2548 GCAAGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGA 2607 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || |||||| ||||| ||| || | ||||| ||| Sbjct 2608 GGGATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCC 2667 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || |||| ||||| | || |||||||| Sbjct 2668 ACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 >seq9178 Length=1540 Score = 104 bits (114), Expect = 5e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| ||||| | ||| || ||| |||||||||| Sbjct 183 ACCACCACGAAGACGAAGGACGAGATGCAAAGTTGACTCCTTCTGGATGTTATAATCAGC 124 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||| || |||| |||| || |||||||||||||| || ||||| || ||||| || Sbjct 123 AAGTGTACGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGCGG 64 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || ||||| |||||||| || || || |||||| Sbjct 63 AATGCCTTCCTTATCTTGAATCTTTGCCTTCACATTA 27 >seq82767 Length=6942 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| |||| |||||||| | ||| || | || | || | ||||| |||||| ||| Sbjct 3843 ATAGTACCTCCTCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAA 3902 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | || |||| |||| ||||| |||||||||||||| |||| ||||| || ||| Sbjct 3903 TCTGCCAAGGTTCTACCATCTTCCAACTGTTTACCAGCAAATATTAGCCTCTGCTGGTCA 3962 Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446 || ||||| |||||||| || || Sbjct 3963 GGAGGTATGCCTTCTTTGTCCTG 3985 >seq55416 Length=9261 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| |||| || ||||| | ||| || | || | || | ||||| |||||| ||| Sbjct 3904 ATAGTACCTCCCCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAA 3963 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | || |||| |||| |||||||||||||| ||||| |||| ||||| |||||| Sbjct 3964 TCTGCCAAGGTTCTACCATCTTCCAATTGTTTACCGGCAAATATTAGCCTCTGCTGATCA 4023 Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446 || ||||| |||||||| || || Sbjct 4024 GGAGGTATGCCTTCTTTGTCCTG 4046 >seq70367 Length=2979 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||||| || || || |||| |||| || || ||||||||||| || || Sbjct 468 GATGTTGTAATCAGCCAAGGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCT 409 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| ||||| || || || || || || || || |||||||| || | Sbjct 408 CTGCTGATCCGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTTACATTGTCAATTGT 349 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||| || ||||| || |||||||| || || | || || | ||| ||||| Sbjct 348 GTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGTAAGGGTCTTCACAAAAATCTG 289 Query 192534 CAT 192536 ||| Sbjct 288 CAT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982941222995550