Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq82767 100 5e-16 seq99159 96.9 6e-15 seq55416 91.5 3e-13 >seq82767 Length=6942 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| |||| |||||||||| ||| || | || | || | ||||| ||||| | Sbjct 3841 TCATAGTACCTCCTCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGT 3900 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| || | || | || ||||| |||||||||||||| |||| ||||| |||| Sbjct 3901 AATCTGCCAAGGTTCTACCATCTTCCAACTGTTTACCAGCAAATATTAGCCTCTGCTGGT 3960 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| ||||| |||||||| || || Sbjct 3961 CAGGAGGTATGCCTTCTTTGTCCTG 3985 >seq99159 Length=5808 Score = 96.9 bits (106), Expect = 6e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 || || || | ||| | ||| | ||| || |||||| || || | || || ||| | Sbjct 1591 CGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCTAGAGTGCGTCCA 1650 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | || || ||||||||||| || ||||| ||||| || ||||| ||||| || Sbjct 1651 TCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGTATCCCTTCCTTG 1710 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| ||| |||||| || || || || || || || || || ||| Sbjct 1711 TCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAACCTCCAGGGTTATG 1770 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || | || || | || ||||||||| Sbjct 1771 GTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATT 1806 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 171908 TCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCC 171967 |||| | ||||| | || || ||||| ||||| || ||||| || || || || || || Sbjct 1872 TCGTCCATCATCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGAGGAATGCC 1931 Query 171968 TTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAG 172027 || |||||||| || || || ||||| ||| ||||| || || || || || Sbjct 1932 CTCCTTATCTTGGATCTTGGCCTTGACATTGTCTATGGTATCGGAGCTCTCAACCTCAAG 1991 Query 172028 AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||| || |||||||| ||||||| || || ||||| Sbjct 1992 AGTAATGGTCTTTCCAGTTAAGGTTTTAACAAAGATTTGCAT 2033 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || ||||| | |||| ||| || || || || ||| Sbjct 2488 ATACCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCT 2547 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | |||||| || ||||| || || || || ||||| || Sbjct 2548 GCAAGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGA 2607 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || |||||| ||||| ||| || || ||||| ||| Sbjct 2608 GGGATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCC 2667 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || |||| ||||| | ||| |||||||| Sbjct 2668 ACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 >seq55416 Length=9261 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| |||| || ||||||| ||| || | || | || | ||||| ||||| | Sbjct 3902 TCATAGTACCTCCCCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGT 3961 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| || | || | || |||||||||||||| ||||| |||| ||||| || | Sbjct 3962 AATCTGCCAAGGTTCTACCATCTTCCAATTGTTTACCGGCAAATATTAGCCTCTGCTGAT 4021 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| ||||| |||||||| || || Sbjct 4022 CAGGAGGTATGCCTTCTTTGTCCTG 4046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903755746799400