Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq76578 154 4e-32 seq53764 96.9 1e-14 seq93775 93.3 1e-13 seq77324 84.2 6e-11 >seq76578 Length=9864 Score = 154 bits (170), Expect = 4e-32 Identities = 238/340 (70%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| |||||| || ||| || ||||||||| ||| | || || | Sbjct 1828 ATTTCTAACAGTCCCATCATACTTAACCATGATATCTTCCATAGCCTTCACCAATCGCCT 1887 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||||| |||||| ||| ||||| || || |||||||| ||||| | | |||||| Sbjct 1888 TTGAATATATCCAGTTTCAGAAGTTTTCACTGCAGTATCAATAAGACCTTCTCTACCACC 1947 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| ||||||||||| | |||| || | || | || | | ||| | ||||| || Sbjct 1948 CATGGCATGGAAGAAGAATTCTTGAGGAGACAATCCTCGAAGATATGAGTTTTCAACAAA 2007 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 |||||| ||| || || || ||||| |||||||| || || | || || | Sbjct 2008 ACCACGACTCTCTGGACCATAATCATCTTTGGTGAAGTGTGGTAGTGTACGGTCTACAAA 2067 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || | || || || || || ||||| |||||||| || | || | | ||||||| || Sbjct 2068 ACCAAAAGGAATTCGTTTGCCTTCAACATTCTGCTGGCCGACACATGCAGTCATCTGAGA 2127 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||| | ||| ||||| || ||||| | |||||| Sbjct 2128 AATATTGATGAAACTTCCCTTTGACCCAGCGGTAACCATA 2167 >seq53764 Length=14654 Score = 96.9 bits (106), Expect = 1e-14 Identities = 338/514 (66%), Gaps = 28/514 (5%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||||||||| || | || || || | ||| | ||||| || | ||| || ||| Sbjct 10826 CTATCAAACCTTCCTGGCCGTAACAAGGCAGAGTCAAGAATATCAGCACGGTTAGTAGCT 10885 Query 288910 GCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGAT 288967 || | |||| ||| | | || ||| ||| |||||||| ||| || | |||| Sbjct 10886 GCAACCACAATTATACCAGTA--TTCCCTTCAAAACCATCCATTTCTGTCAACAGCTGAT 10943 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC-GCTCCttttt 289026 | ||||| |||||||||||||||||| |||| |||| | | | |||| ||| Sbjct 10944 TTAGTGTCTGTTCCCTTTCATCATTT---CCTC------CACCAATACCTGTTCCTCTTT 10994 Query 289027 --ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC-- 289082 ||||||||||||||||| |||| || || | ||| || | ||||| | || Sbjct 10995 GACGCCCAACAGCATCAATTTCATCAACAAATATAATACATGGTGCATTTTCCTTTGCCT 11054 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 ||| ||| | || | || || || || |||| ||| || |||| || ||||| || Sbjct 11055 TCTTGAAAAGA--TCACGGACCCGAGAAGCACCAACACCGACGAACATCTCAACAAACTC 11112 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| | || | | || | || | ||| |||||| || || | ||| | || || | Sbjct 11113 GGAACCTGA-AATAGAGAAAAAGGGAACACCTGCTTCACCAGCAATAGCCTTGGCTAGCA 11171 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG--TACTTTTGCCC- 289258 ||||| || || ||||| || || || ||||||||||| || ||| ||| Sbjct 11172 AGGTCTTCCCAGTGCCAGGAGGACCAATTAGGAGAACTCCCTTAGGAATACGAGCACCCA 11231 Query 289259 CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 |||||| || | ||||||| |||| | || || || | ||| || || | | Sbjct 11232 CAGCAG---TAAACCTCTCAGGCTTCTTCAGGAACTCCACCACCTCCATAAAATCTTGCT 11288 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| ||||| || || |||||| | || || Sbjct 11289 TTGCTTCATCCACCCCAGCAACATCATCGAATGT 11322 >seq93775 Length=13175 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || ||||||| |||||| || || |||||||||||||||||||| ||||||||||| || Sbjct 5928 GCTCCGTGTGCAATCATGCAGTCTCGCTCCATTTCACCGAAACGGAGACCACCATCACGC 5869 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGAT----GGAGCGGCT 251600 | | ||||| ||||| || | |||||| | | |||||| | ||| | Sbjct 5868 GATCGTCCCTCAGCAGGTTGTCTCGTGAGAATCTGAACAGGACCCCTACCCCGAGAGTGA 5809 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || ||| || | ||||||||||| || | ||||||| | | |||||| | ||| || Sbjct 5808 ATTTTG----TCGTCAACCATATGCTTCAGCCTCTGGTAGTAGGTGGGACCAAGGAATAT 5753 >seq77324 Length=11343 Score = 84.2 bits (92), Expect = 6e-11 Identities = 214/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCG-CAATTG 289087 ||||| ||||||||||| |||||||| || | || || | | ||| || | | ||| Sbjct 5960 ACCAATTGCATCAATTTCATCAATGAATATGATACTAGGTGCACATTGCCTTGCCTCTTG 5901 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 || || | ||| || | |||| |||| || ||| |||| || | || |||||| Sbjct 5900 GAACAAACT-TCTAACCCTCGATGGCCCAACCCCCACAAACATCTCCATGAAATCAGAAC 5842 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||| | || | || | ||| | || ||||| ||| | || || ||||| Sbjct 5841 CAGATA-TGGACAGAAAAGGCACACCAGACTCACCTGCAGTTGCTTTTGCTAGGAGTGTT 5783 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG-CCCCAGCAGA 289265 |||||||| ||||| ||||| | ||||| |||| | || | ||| | ||||||| Sbjct 5782 TTACCTGTCCCAGGAGGTCCAACCAATAGCGCTCCTCTAGGGATTTTGGCCCCCAGC-TC 5724 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| |||| ||| |||||| || | || | ||| || || | ||||| || Sbjct 5723 CTCATACTTCTTTGGGTTCTTTAGGAAGTGAACGAACTCCATAATCTCTTGCTTTGCTTC 5664 Query 289326 ATCACATCCTGCTACATC 289343 ||||| || || ||||| Sbjct 5663 GTCACAGCCAGCAACATC 5646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469517097117641