Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq85463 141 1e-28 seq31467 141 1e-28 seq115592 131 2e-25 seq110764 107 2e-18 seq71912 86.0 7e-12 seq100051 84.2 2e-11 >seq85463 Length=6098 Score = 141 bits (156), Expect = 1e-28 Identities = 178/244 (73%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 158285 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTG 158344 ||||| ||||| || || |||||||||||||| ||| ||| ||||||| ||||| || Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 158345 CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCC 158404 |||||| |||| ||||| |||||||| || || || |||||||| | || || || | Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 158405 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158464 ||||| ||||| || || |||||||| || ||| | ||| | ||||| |||| || Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 158465 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 158524 | || | |||| ||| | | ||||| ||| |||||||| ||||||||| Sbjct 4198 C-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTATG 4250 Query 158525 CATG 158528 |||| Sbjct 4251 CATG 4254 >seq31467 Length=18065 Score = 141 bits (156), Expect = 1e-28 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 158131 CGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTAC 158190 ||| || ||||| |||||||| || || || ||| ||||||||| || | || || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 158191 TTCCTCACTCGTTCGTG-AAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCG 158249 ||| | | | ||| | |||| || |||| || || || | ||||||| | || Sbjct 5419 TTC-TAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCG 5361 Query 158250 GTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCT 158309 ||||||||||||| || ||||| ||||| || || ||||| ||||| | || ||||||| Sbjct 5360 GTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCT 5301 Query 158310 TCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATG 158364 ||||||| ||| ||||||||||| ||||| || |||||||| || ||||| || Sbjct 5300 TCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq115592 Length=218 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 159850 GAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGA 159909 ||||||||||| || | || | || | || | || || ||||| | ||| ||||| | Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 159910 ACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAG 159969 | || | | ||||||||| || |||||||| || || ||| | ||||||||| Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 159970 AGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTG 160029 || || ||||| || ||||||||||| |||||||| ||||| || ||||| || ||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 160030 CGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTT 160066 | ||||| || || || ||| | |||||||| ||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq110764 Length=2751 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 158336 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTT 158395 ||||| || ||||||||||| ||||| |||||||| || || ||||||||||| || | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 158396 GGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 158442 || || ||| ||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq71912 Length=2485 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/160 (74%), Gaps = 9/160 (6%) Strand=Plus/Minus Query 160131 CGTGCTTACGATTTC-GTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 160189 |||||||| |||||| || ||| || || | || || |||||| || |||||||||| Sbjct 1571 CGTGCTTATGATTTCCGTTTCTCAGGAAATTCGTGCCGCGGAAGATTCAAAATTTGAGAC 1512 Query 160190 CTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGG-CACCTGCT- 160247 || ||||||||||| || ||||| |||||||| || | |||| |||| || | || Sbjct 1511 TTTTTACACCAAAAATATTCTATTAAACGAAGG--TA--TTCATGTTTGGACAGCGACTC 1456 Query 160248 --GATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 160285 ||||| | ||||||| |||| ||| | ||||| || Sbjct 1455 AAGATCAGCATAATGAAAATCTTATATTCTCTGAAGAGGT 1416 >seq100051 Length=9184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 158303 TTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCA 158362 ||||||||| |||| ||| |||||||| || ||||| || ||||||||||| |||| Sbjct 2493 TTGATCTTCTAATATGCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAACTGCT 2434 Query 158363 TGGCCTGTTGTCGGCATCTGGTTCAC 158388 |||||||| | || ||||||||||| Sbjct 2433 TGGCCTGTAATGGGTATCTGGTTCAC 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547538177022760