Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq115592 168 7e-37 seq85463 156 5e-33 seq31467 141 1e-28 seq99465 131 2e-25 seq110764 125 8e-24 seq71831 120 3e-22 seq110392 104 3e-17 seq96029 102 9e-17 seq100051 82.4 8e-11 >seq115592 Length=218 Score = 168 bits (186), Expect = 7e-37 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 152917 GTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAAT 152976 ||||| ||| | ||||| | || ||||| | || |||||||||| ||| ||||| ||| Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 152977 ACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAA 153036 ||||| | | |||||||||| ||||| || ||| ||||| || ||||||| Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 153037 GAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCT 153096 ||||| || ||||| ||||| ||||||||||| || |||||||| || ||||| ||||| Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 153097 TTTAGCAATAAACGCTGGCTTCATTTCTTTATG 153129 ||| ||||||||| ||| | |||||||||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATG 4 >seq85463 Length=6098 Score = 156 bits (172), Expect = 5e-33 Identities = 207/287 (72%), Gaps = 18/287 (6%) Strand=Plus/Plus Query 151544 CACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTG 151603 || ||||||||||| || | ||||||||||| ||| ||| |||| || |||||| | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 151604 CACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGC 151663 |||||| |||| || || |||||||| || ||||| |||||||||| || ||| ||||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 151664 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGC 151723 |||||| ||||| || || |||||||| || ||| | ||| | | ||| || | Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGT-----C 4192 Query 151724 AAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATG 151783 |||||| || | |||| || | | |||||||| || ||||| ||||||||| Sbjct 4193 AAAGTC--AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTATG 4250 Query 151784 CACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 151830 | ||||||| || | | |||| ||||| ||||||| ||| Sbjct 4251 C---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq31467 Length=18065 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 151391 GGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACT 151450 || || |||||||| ||||| || || || ||| || ||||| ||||| |||| ||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 151451 TCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGT 151510 ||| || | | || ||||| ||||| || || || | ||||||| | |||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 151511 CAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTC 151570 ||||| ||||| || || || ||||| ||||| || ||||||||| | || | |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 151571 CAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATG 151623 ||||| ||| |||||||| || |||||| | |||||||| || || || || Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq99465 Length=4513 Score = 131 bits (144), Expect = 2e-25 Identities = 203/289 (70%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 151280 GGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATG 151339 |||||||| ||| ||||||| ||||| | || |||||| | || ||||||| |||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 151340 CTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCT 151399 |||| ||| | || ||||| || ||||| ||||| | |||||| || || || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCG 3081 Query 151400 GGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTG 151459 ||||| |||| || || || ||| || ||||| ||||| |||| |||||| || Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 3141 Query 151460 GTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAA 151519 | | | ||||| ||||| || | || | |||||||| |||||||| | | || Sbjct 3142 ATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-AA 3200 Query 151520 GAGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCT 151568 || | || || ||||| || ||| | ||||||||||| || | |||| Sbjct 3201 GAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq110764 Length=2751 Score = 125 bits (138), Expect = 8e-24 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 151595 CGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTT 151654 |||||| | ||||||||||| || || |||||||| || ||||||||||||||||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 151655 GGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 151701 ||| ||| ||||||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq71831 Length=3823 Score = 120 bits (132), Expect = 3e-22 Identities = 196/281 (70%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 151280 GGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATG 151339 |||||||| ||| | ||||| ||||| || || |||||| | || ||||||| |||| Sbjct 956 GGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTCTTGTACTTTCAACTTCATG 897 Query 151340 CTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCT 151399 |||| || | || ||||||| |||||| ||| |||| || |||||| | | || ||| Sbjct 896 ATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCATTTCATATGTTAAGCGTAGCT 838 Query 151400 GGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTG 151459 |||| | || || || || ||| | ||||| ||||| ||| |||||| || Sbjct 837 AGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGCAACTTCTAGTTTG 778 Query 151460 GTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAA 151519 | | | ||||| ||||| || || || | || |||| || ||||||| || Sbjct 777 ATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATACAGATTTAGTCAAGAGAAA 718 Query 151520 GAGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCG 151560 || || || || |||| |||| || ||||||||||| || Sbjct 717 GAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCG 677 >seq110392 Length=2942 Score = 104 bits (114), Expect = 3e-17 Identities = 175/247 (71%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | ||||||||||| ||| || | | || |||||||||||| | ||| |||| Sbjct 548 TTTGATATTATGGATGACTGG-TTACGAAGGGGCCATTTCGTTTTTGTAGCCTGGCCTGG 490 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 || | || | ||| ||| ||| ||| | | || |||||| | || | || || || Sbjct 489 CCTATTGCTCTCTCCTTGTGCCTATTTTG-TGTAGGGGGTTGGTTCACAAGTACAACCTT 431 Query 152478 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCT 152537 | || |||||||| || || ||||| ||||||||| |||| ||| || ||||| Sbjct 430 TGTAACTTCATGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGCTGTAA-TTTCT 372 Query 152538 TA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGG 152596 || | | |||||||||||||| || || | | | |||||| | || | || ||| Sbjct 371 TAACAACCGCAGTTTCTACTCCTGCTAATAGTTTAGTGCATTCTTTATTGTTACTGTGGA 312 Query 152597 GTCCTGA 152603 ||||||| Sbjct 311 GTCCTGA 305 >seq96029 Length=8464 Score = 102 bits (112), Expect = 9e-17 Identities = 202/295 (68%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 152401 TTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGG 152460 |||| || ||| |||| || | || ||| | ||| ||| ||||||| || |||||| Sbjct 1615 TTTGGAGGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGG 1673 Query 152461 CTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTG 152520 | | || || ||||| | || |||||||| || || |||||||||||| || Sbjct 1674 TTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTG 1733 Query 152521 GAGGGCGCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTC 152579 || ||| || |||||| || | |||||||||| || || || | | | ||||| Sbjct 1734 GAAGGCTGTAA-TTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATTC 1792 Query 152580 TCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGG 152639 | | || | || ||| ||||||| | ||||| ||||| | ||| ||| | || Sbjct 1793 TTTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGGG 1852 Query 152640 AGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATG 152694 || || ||| |||| || || || || || |||||| ||||| ||||||||| Sbjct 1853 GGGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATG 1907 >seq100051 Length=9184 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 151565 ATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGG 151624 |||||| |||| ||| ||||||||||| |||||| | ||||||||||| | || ||| Sbjct 2490 ATCTTCTAATATGCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAACTGCTTGG 2431 Query 151625 CCTGTTGTCGGTATCTGGTTCAC 151647 ||||| | |||||||||||||| Sbjct 2430 CCTGTAATGGGTATCTGGTTCAC 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548784273931960