Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq31467 134 2e-26 seq99465 127 2e-24 seq85463 123 3e-23 seq96029 114 1e-20 seq71831 105 8e-18 seq110764 89.7 6e-13 >seq31467 Length=18065 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 72787 GGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACT 72846 || ||||| ||| | ||||| || || |||||||| ||||| ||||| | || ||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 72847 TCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGA 72906 || | | ||| | || || ||||| || || | || | || || | | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 72907 CAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTC 72966 ||||| |||||||| ||||| || || || |||||||| ||||| | |||| |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 72967 CAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 73015 || ||||| ||||||||||||||||| ||||||||||| || |||| Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTG 5250 >seq99465 Length=4513 Score = 127 bits (140), Expect = 2e-24 Identities = 195/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || |||||||||||||| | ||| || || |||| |||||||||||| | || ||| | Sbjct 2979 TTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATGATTGTATTCTAG 3038 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807 || || || || || || ||||| | |||||| ||| ||||| ||| | |||| Sbjct 3039 GCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCGGGTGTATTCGAC 3093 Query 72808 GGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACA 72867 || || |||||||| ||||| ||||| | || ||||| | | ||||| | || Sbjct 3094 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGTAAACC 3153 Query 72868 ACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAAC 72927 ||||| || || | | || | || || || ||||| || | | ||||| | ||||| Sbjct 3154 ACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-AAGAAGCTTATAAT 3212 Query 72928 ATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCT 72964 || || ||||| |||| ||||| || |||| |||| Sbjct 3213 ATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq85463 Length=6098 Score = 123 bits (136), Expect = 3e-23 Identities = 207/300 (69%), Gaps = 22/300 (7%) Strand=Plus/Plus Query 72939 TCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATT 72998 |||||| ||||| || |||| |||||||| ||||| ||| ||||||||||||| || Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 72999 ACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTG 73058 ||||||| |||| |||| | |||||||| || | ||||| || | | |||||| | Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGC--TAGGTATCAG 4136 Query 73059 TACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT--GCAAAC 73116 ||||| ||||| || || || ||||| || ||| |||| || || ||| |||| Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 73117 GGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTT 73176 |||| | |||| ||| | | ||| | || |||||||| || |||||| Sbjct 4197 TCAAAG---------TCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTT 4247 Query 73177 ATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACAACA 73236 |||| |||| || || | | | ||||||||||| ||| ||| || ||||| Sbjct 4248 ATGC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGAAGCTCCAACA 4298 >seq96029 Length=8464 Score = 114 bits (126), Expect = 1e-20 Identities = 199/288 (69%), Gaps = 1/288 (0%) Strand=Plus/Plus Query 73412 GGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTA 73471 || ||| |||| || ||||| || ||||||| || | || || || |||||||||| | Sbjct 1621 GGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGGTTCGCA 1679 Query 73472 GGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGA 73531 || || ||||| || || |||||||| || ||| | ||| || ||| | || || Sbjct 1680 GGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTGGAAGGC 1739 Query 73532 GCAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTG 73591 ||||| ||||| | ||||| || | | || | || | | | ||| | ||||| Sbjct 1740 TGTAATTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATTCTTTATTG 1799 Query 73592 TTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTA 73651 || || ||| | || || | |||||||||| || | |||| |||||| || || || Sbjct 1800 TTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGGGGGGTCTG 1859 Query 73652 TGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 73699 |||| || || || | ||||| || ||||| |||||||||||| Sbjct 1860 TGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATG 1907 >seq71831 Length=3823 Score = 105 bits (116), Expect = 8e-18 Identities = 209/307 (68%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 72658 TTCCTTG-TGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 72716 || |||| | || ||| | ||||| || || | |||||||||||| ||||| || || Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 72717 AGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTT 72776 |||| |||||||||||| | || || | || || ||| |||| || ||| |||| || Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCAC-ACATTCTTATGTACCCATT 857 Query 72777 CCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 72836 |||||| | | ||||| || | | || || || ||||||| ||||| ||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 72837 ACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTA 72896 | | ||||| | | ||||| | || ||||| || || | || | || || Sbjct 796 CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATA 737 Query 72897 TAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAG 72956 | || | ||||| ||||||| ||||| || | | |||||||| ||||| || | Sbjct 736 CAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCG 677 Query 72957 ATTAATC 72963 ||| ||| Sbjct 676 ATTGATC 670 >seq110764 Length=2751 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 72991 CGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATG 73050 ||||| |||||||||||||| |||| | |||||||| || | ||||| || | | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 73051 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAAT 73099 |||||| || ||||| |||||||| ||||| ||||| |||||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAAT 1648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572000017886440