Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq109031 102 7e-17 seq99159 98.7 8e-16 seq70367 98.7 8e-16 seq82767 89.7 4e-13 seq55416 87.8 1e-12 >seq109031 Length=8095 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||||| |||||||| || || || | ||| |||| Sbjct 77 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACGATCACGCTGGAAGTGGAGAGCTCG 136 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||| ||||| || || | || ||| || Sbjct 137 GACACGATCGATAATGTGAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCGGACCAG 196 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| ||| || |||||||| || |||| || || ||||||| |||||| Sbjct 197 CAGAGGCTGATTTTTGCCGGCAAACAGCTAGAAGATGGTAGGACTTTGGCGGACTACAAC 256 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| || || || ||||| ||||| | || ||||| || |||| Sbjct 257 ATTCAAAAGGAGTCGACTTTGCATCTGGTGCTTAGGCTGCGTGGTGGAA 305 >seq99159 Length=5808 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || ||||| ||||| || || || ||||| |||| | | Sbjct 2261 ATGCAAATCTTTGTTAAGACCTTAACGGGCAAGACAATCACGCTCGAAGTGGAGAGTTCC 2202 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| || ||| | ||| || || Sbjct 2201 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 2142 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || || ||||| || |||| | | || | || ||||||||| Sbjct 2141 CAGAGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGCCGCACTCTTGCTGATTACAAC 2082 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| ||||| | ||| |||| Sbjct 2081 ATTCAGAAAGAGTCTACTCTCCACCTGGT 2053 >seq70367 Length=2979 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | || || || ||||| ||| | || ||| | Sbjct 58 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGAGCTCC 117 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || ||||| ||||| |||||| | || |||||| Sbjct 118 GACACTATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCGGATCAG 177 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || ||||| ||||||| | | || ||||||| |||||| Sbjct 178 CAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 237 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| || || |||||| |||| | || || || || || Sbjct 238 ATTCAGAAAGAGTCGACCTTGCACTTGGTCCTGAGGCTCCGTGGTGG 284 >seq82767 Length=6942 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 |||||||||||| | || || || || || || || | ||| ||||||||| |||| Sbjct 3982 GACAAAGAAGGCATACCTCCTGACCAGCAGAGGCTAATATTTGCTGGTAAACAGTTGGAA 3923 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| ||||| |||| |||||||| || || |||||||| || | ||| | || ||| Sbjct 3922 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTTA 3863 Query 110486 AGACTGCGAGGGGG 110499 ||||| |||| || Sbjct 3862 AGACTTAGAGGAGG 3849 >seq55416 Length=9261 Score = 87.8 bits (96), Expect = 1e-12 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 110359 GATTGCCG-ACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAAC 110417 |||||| | ||||||||||| | || ||||| || || || || | ||| ||||||| Sbjct 4051 GATTGCAGGACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAAC 3992 Query 110418 AGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACA 110477 | |||| |||| ||||| |||| |||||||| || || |||||||| || | ||| Sbjct 3991 AATTGGAAGATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACC 3932 Query 110478 TGGTGTTAAGACT 110490 | || |||||||| Sbjct 3931 TTGTTTTAAGACT 3919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412227791366549