Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq90120 118 2e-20 seq55841 96.9 5e-14 >seq90120 Length=6362 Score = 118 bits (130), Expect = 2e-20 Identities = 170/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| ||||| || ||||||||| | ||||| || ||| | | | Sbjct 1796 ACTTGGTGACGGCCTTGGTTCCCTCAGAAACGGCGTGCTTCGCCAGCTCTCCGGGGAGAA 1855 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | ||||||||||||||| ||||| | || || |||||| ||| | Sbjct 1856 CCAATCTCACGGCGGTCTGGATTTCGCGAGAAGTAATAGTCGGCTTCTTGTTGTAGCGAG 1915 Query 1485593 CCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 | || || | || | | | ||| || |||| || ||||||| || ||||||| Sbjct 1916 CGAGACGCGACGCCTCCTGCGCCAAT-TTCTCGAAGATATCGTTGATGAAGCTGTTCATG 1974 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||| | ||| ||||||| || | ||||||||| |||||||| || |||||| Sbjct 1975 ATCCCCATGGCCTTGCTGGAGATTCCGATGTCGGGGTGGACCTGCTTCAGAACCTTG 2031 >seq55841 Length=21394 Score = 96.9 bits (106), Expect = 5e-14 Identities = 167/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || || ||||| || ||||| || ||||||||| | |||||||| ||| | | Sbjct 10752 TGAACTTCGTTACAGCCTTCGTCCCCTCGGAAACGGCGTGCTTCGCCAGTTCACCGGGAA 10693 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | |||||||||||| ||||| || | ||||| ||||||| | Sbjct 10692 GCACCAATCTCACGGCGGTCTGAATCTCCCGAGATGTAATCGTCGGCTTCTTGTTATACC 10633 Query 1485590 GCGCCAGGCGGCCGGCCT-CGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||| || || | | | ||| || |||| || || |||| || |||| Sbjct 10632 GCGCCAGCCGCGATGCTTCCTGCGCCAAT-TTCTCGAAAATATCATTGATGAAGCTGTTC 10574 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||| | ||| | ||||| || | ||||| || |||||||| ||||||||| Sbjct 10573 ATGATCCCCATGGCCTTGCTCGAGATTCCGATATCGGGATGGACCTGCTTCAGCACCTTG 10514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7903269448179927