Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq70367 123 2e-23 seq99159 120 2e-22 seq117762 104 2e-17 seq66988 96.9 2e-15 seq95628 95.1 8e-15 seq4809 95.1 8e-15 seq111813 89.7 3e-13 seq109834 86.0 4e-12 >seq70367 Length=2979 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||||||||||| ||| | ||| ||| ||||||||||| ||||||| | | |||| | Sbjct 273 CCTCAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCC 214 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || || ||||||||||| ||||| || | ||||| || | || | || ||||| Sbjct 213 ATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGGAATGCCTTCCTT 154 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || || || ||| | || | || | |||||| |||| ||| || Sbjct 153 GTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCGACCTCAAGGGTGAT 94 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || |||||||| |||||||||||||| Sbjct 93 GGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 58 >seq99159 Length=5808 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | ||||| || ||||| |||| || |||||||||||| || ||||||| | Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || ||||| || || || |||| | |||||||| | || Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGC------C 34924 | ||| |||||||| | || || ||| || || |||| ||| || | | Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTAGCTTTCAC--AT--TATCAATT--GTGTCCGAACTC 1752 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||||||| || |||||||||||||| |||||||||||||| Sbjct 1753 TCAACCTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || ||||||||| ||||| ||||||| || |||| | || Sbjct 2278 AGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGGCCGTCC 2337 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||||| | |||||| ||| | || | ||||||||||| Sbjct 2338 TCAAGCTGCTTTCCCGCGAAGATCAACCTTTGCTGATCTGGGGGAATGCCCTCCTTGTCT 2397 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || ||| || |||| ||| || ||| Sbjct 2398 TGGATCTTAGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACTTCAAGGGTAATTGTC 2457 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 2458 TTCCCAGTTAGGGTCTTAACGAAGATCTGCAT 2489 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| ||||| | ||| || |||| ||| | ||||| ||||| || ||||| ||||| | Sbjct 1805 TTCCACCCCTTAGCCTGAGCACCAAGTGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCGG 1864 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | || |||| || || ||||| || ||||| |||| | ||||| ||| | | Sbjct 1865 CAAGTGTTCGTCCATCATCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGAG 1924 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | |||||||| || | || || ||||| |||| | || | ||| | Sbjct 1925 GAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCTATGGTATCGGAGCTCTCAA 1984 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| || ||||||||||| || | ||| || |||||||| |||||| Sbjct 1985 CCTCAAGAGTAATGGTCTTTCCAGTTAAGGTTTTAACAAAGATTTGCATG 2034 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | ||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 2506 AGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCAAGGGTGCGACCATCT 2565 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || ||||||| | ||||||||| | || | ||| |||||||| Sbjct 2566 TCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAGGGATCCCTTCCTTGTCC 2625 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTG---GCCT-CGACATCAACGGTTAT 34941 | ||||| || ||| |||||||| | || | | || || | ||| || Sbjct 2626 TGGATTTTAGCCTTTACGT----TATCGATTGTGTCTGAGCTTTCCACCTCGAGGGTGAT 2681 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || || ||||||||||| Sbjct 2682 TGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | || ||| ||||||||||| || || | || |||| |||| Sbjct 2050 AGGACCAGGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATCT 2109 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||||| || ||||||||| | || | ||||||||||| Sbjct 2110 TCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 2169 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| || ||| || || | || || Sbjct 2170 TGAATCTTGGCCTTAAC--AT--TGTCGATGGTGTCGGAACTCTCCACTTCGAGCGTGAT 2225 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||| | |||||| |||||||| |||||| Sbjct 2226 TGTCTTGCCCGTTAAGGTCTTAACAAAGATTTGCATG 2262 >seq117762 Length=309 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | |||| |||||||| ||||| || || | | | |||| |||| Sbjct 43 AGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGTCCATCC 102 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||||| | |||||||| | || | ||||||||||| Sbjct 103 TCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 162 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | |||||| |||| || |||||| Sbjct 163 TGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGCTCTCGACTTCAAGAGTGATGGTC 222 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||| ||||| Sbjct 223 TTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq66988 Length=1372 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| || || |||| ||| | || | || || || ||||||||||||||| Sbjct 178 TCCTTCTGAATATTGTAATCCGCAAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAG 237 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || ||||| || |||| | || ||||| || | || || |||||| Sbjct 238 ATCAGGCGCTGCTGATCGGGCGGAATTCCTTCCTTATCTTGGATCTTCGCCTTGACGTTG 297 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| |||||| || | || || |||||||| || ||||| || || Sbjct 298 TCGATGGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCACG 357 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 358 AAGATCTGCAT 368 >seq95628 Length=1400 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || |||||||| |||| ||| | |||| ||||||||| ||||| || || | Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || |||| || || ||||| ||||| ||||| | | ||||| || | || Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | |||||||||||| | || || || || | |||| ||| | || || Sbjct 113 ATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAACC 54 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || || ||||| || ||||| ||||| Sbjct 53 TCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||| ||||| ||||| ||||| | ||| | | |||| Sbjct 446 AGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCC 387 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||||| | |||||||| | || | ||||||||||| Sbjct 386 TCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCC 327 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | || | ||| || || | ||| |||||| Sbjct 326 TGAATCTTAGCCTTGACATTGTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATGGTC 267 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || ||||| ||||| ||||||||| Sbjct 266 TTCCCTGTCAGTGTCTTGACAAAAATCTGCATG 234 >seq4809 Length=1103 Score = 95.1 bits (104), Expect = 8e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||||||||||||||||| | ||||||||| | || | || |||||| Sbjct 12 TCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTG 71 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || |||||| | || | || | |||||| |||| ||| ||| Sbjct 72 TCTTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATG 131 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || |||||||| || |||||||||||||| Sbjct 132 GTCTTACCGGTGAGGGTTTTCACAAAGATCTGCAT 166 >seq111813 Length=4153 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| ||||| | ||| ||||| |||| ||| ||||||||| ||||| ||||| | | Sbjct 1101 CCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 1160 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| || || ||||| || || || ||||| || |||||||| | || Sbjct 1161 AGCGTCCAGCCATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGA 1220 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||| || | || | || | ||| || Sbjct 1221 ATGCCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCACC 1280 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || ||||||||||| || | ||||| | || |||||||| Sbjct 1281 TCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCAT 1327 >seq109834 Length=6695 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||| |||||||||||||| | |||||||| | || | ||||||||| Sbjct 5 TCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCTTG 64 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || |||||| |||| | || | ||| || || | ||| ||| Sbjct 65 TCCTGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCTCTCCACCTCGAGGGTGATG 124 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || |||||||| || || ||||||||||| Sbjct 125 GTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325208563303667